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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GHMEHRGTDIISLSQAATKIHQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFIWDMVS
QNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQS
GSGVKVATEAEARQWLSELNLPNSSLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEE
NMKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQ

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3o01:A 283 283 1.0000 1.0000 1.0000 0.0 3o01:B, 3o02:A, 3o02:B
2 3zqe:B 248 201 0.6890 0.7863 0.9701 5.04e-141
3 3zqe:A 272 207 0.6890 0.7169 0.9420 7.73e-138 7agx:2F, 7agx:2K
4 8v5e:A 195 200 0.3286 0.4769 0.4650 1.47e-52 8v5c:B
5 3r9v:B 163 195 0.2509 0.4356 0.3641 1.24e-32
6 4ga6:A 493 92 0.0954 0.0548 0.2935 0.92 4ga4:A, 4ga4:B, 4ga6:B
7 4lfl:B 172 56 0.0601 0.0988 0.3036 1.1 4lfl:D, 4lfm:B, 4lfm:D, 4lfn:B, 4lfn:D
8 3idu:A 116 74 0.0565 0.1379 0.2162 1.7 3idu:B
9 8ssl:A 1072 58 0.0813 0.0215 0.3966 1.8 5cjt:A, 5cjt:B, 5cju:A, 5cju:B, 5cjv:A, 5cjv:B, 5cjw:A, 5cjw:B, 8ssl:B, 8ssl:C, 4xc6:A, 4xc6:B, 4xc7:A, 4xc8:A, 4xc8:B
10 6or5:A 2058 32 0.0459 0.0063 0.4062 4.3
11 5knx:B 176 70 0.0742 0.1193 0.3000 4.5 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
12 4f6o:A 268 71 0.0742 0.0784 0.2958 4.8 4f6p:A
13 6i8x:A 149 102 0.0813 0.1544 0.2255 5.6 6i8x:B
14 6il9:A 490 48 0.0565 0.0327 0.3333 8.7 6ila:A, 6ilb:A, 6ilb:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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