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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GHIIRATRKDRHSKVFTSKGPRDRRVRMSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDK

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7vp2:A 83 66 0.9846 0.7711 0.9697 1.21e-40 7vp1:A, 7vp1:B, 7vp2:B, 7vp4:B, 7vp4:A, 7vp4:F, 7vp4:E, 7vp4:J, 7vp4:I, 7vp5:A, 7vp5:B, 7vp5:E, 7vp5:F, 7vp5:I, 7vp5:J, 7vp7:A, 7vp7:B
2 7vp3:C 62 55 0.3077 0.3226 0.3636 8.59e-07 7vp3:D, 7vp3:J, 7vp3:G, 7vp3:L, 7vp3:I, 7vp3:N, 7vp3:P
3 6xpn:B 259 33 0.1538 0.0386 0.3030 1.4 6xpn:A
4 2yck:X 272 66 0.2615 0.0625 0.2576 2.0 2yci:X, 2ycj:A
5 8gy9:A 249 34 0.2154 0.0562 0.4118 2.7 8gy9:B, 8gya:A, 8gya:B, 8gyb:A, 8gyb:B, 8gyb:C, 8gyb:D
6 3no5:E 275 17 0.1385 0.0327 0.5294 4.5 3no5:A, 3no5:B, 3no5:C, 3no5:D, 3no5:F
7 7wrr:A 650 38 0.2000 0.0200 0.3421 6.2 7wrr:B, 7wrr:C, 7wrr:D, 7wrt:A, 7wrt:B, 7wrt:C, 7wrt:D
8 4ylz:C 140 37 0.1692 0.0786 0.2973 6.9 5cbl:A, 5cbl:B, 5cbl:C, 5cbl:D, 6wab:A, 6wab:B, 4ylz:A, 4ylz:B, 4ylz:D, 4ym0:D, 4ym0:A, 4ym0:B, 4ym0:C, 4ym1:A, 4ym1:B, 4ym1:C, 4ym2:A, 4ym2:B, 4ym2:C, 4ym2:D, 4ym3:A, 4ym3:B, 4ym3:C, 4ym3:D
9 9biw:B 528 40 0.1692 0.0208 0.2750 7.9 9biw:A
10 3upt:A 671 42 0.1846 0.0179 0.2857 8.7 3upt:B
11 2wl9:A 300 36 0.2000 0.0433 0.3611 8.8 2wl3:A, 2wl3:B, 2wl3:C, 2wl3:D, 2wl9:B, 2wl9:C, 2wl9:D
12 3puo:A 292 27 0.1538 0.0342 0.3704 9.3 3puo:B, 3s8h:A, 3s8h:B
13 5hkc:A 114 28 0.1538 0.0877 0.3571 9.6 5hk0:B, 5hk0:D, 5hk3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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