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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGYMMYHRKAMGTMKYSKWKGAHGGISHFYGRTPMVEEVRPNEPITLVDRRIMHYVHHSRLRHFQLFRSYQEKSNSTECK
LREGEMLRRRWHRRLQKSFIAFMQFKTMKVLEDQARLVNTYGQAAVNAALGDPWNATDNVARERKSAAVRRQVRALPMVN
VVPKHVATMKQIHNDRFNYRWRVN

The query sequence (length=184) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hiv:CU 184 184 1.0000 1.0000 1.0000 5.81e-140 6hiw:CU, 6hiy:CU, 7pub:CU
2 7aor:g 184 184 0.8587 0.8587 0.8587 1.57e-123
3 7ane:g 99 99 0.4293 0.7980 0.7980 2.12e-53
4 5dpl:A 520 69 0.0978 0.0346 0.2609 2.5 5doo:A, 5dpl:B
5 6tmu:A 550 68 0.1196 0.0400 0.3235 3.6 6tmt:A, 6tmt:B, 6tmt:C, 6tmt:D, 6tmt:E, 6tmt:F, 6tmt:G, 6tmu:B, 6tmu:C, 6tmu:D, 6tmu:E, 6tmu:F, 6tmu:G, 6tmw:A, 6tmw:B, 6tmw:C, 6tmw:D, 6tmw:E, 6tmw:F, 6tmw:G, 6tmw:H, 6tmw:I, 6tmw:J, 6tmw:K, 6tmw:L, 6tmw:M, 6tmw:N, 6tmx:A, 6tmx:B, 6tmx:C, 6tmx:D, 6tmx:E, 6tmx:F, 6tmx:G, 6tmx:H, 6tmx:I, 6tmx:J, 6tmx:K, 6tmx:L, 6tmx:M, 6tmx:N
6 3pvc:A 635 71 0.1033 0.0299 0.2676 3.7 3sgl:A
7 5ei5:A 534 56 0.0870 0.0300 0.2857 4.4 1acj:A, 1acl:A, 2ace:A, 2ack:A, 7ais:A, 7ais:B, 7ait:A, 7ait:B, 7aiu:A, 7aiu:B, 7aiv:B, 7aiw:A, 7aiw:B, 7aix:A, 1amn:A, 1ax9:A, 7b38:A, 7b8e:A, 2bag:A, 5bwb:A, 5bwc:A, 2c4h:A, 2c58:A, 2c5f:A, 2c5g:A, 2cek:A, 1cfj:A, 2ckm:A, 2cmf:A, 5dlp:A, 1dx6:A, 5e2i:A, 1e3q:A, 5e4j:A, 5e4t:A, 1e66:A, 5ehx:A, 6euc:A, 1eve:A, 6ewk:A, 6ezg:A, 6ezg:B, 6ezh:A, 6ezh:B, 6fld:A, 6fqn:A, 6g17:A, 6g1u:A, 6g1u:B, 6g1v:A, 6g1v:B, 6g1w:A, 6g1w:B, 6g4m:A, 6g4m:B, 6g4n:A, 6g4n:B, 6g4o:A, 6g4o:B, 6g4p:A, 6g4p:B, 1gpk:A, 1gpn:A, 1gqr:A, 1gqs:A, 6h12:A, 6h12:B, 6h13:A, 6h13:B, 6h14:A, 6h14:B, 1h22:A, 1h23:A, 1hbj:A, 3i6m:A, 3i6z:A, 5ih7:A, 2j3d:A, 2j3q:A, 2j4f:A, 1jjb:A, 5nap:A, 5nau:A, 5nuu:A, 1oce:A, 1odc:A, 1qti:A, 1som:A, 6tt0:A, 4tvk:A, 1u65:A, 1ut6:A, 2v96:A, 2v96:B, 2v97:A, 2v97:B, 2v98:A, 2v98:B, 2vja:A, 2vja:B, 2vjb:A, 2vjb:B, 2vjc:A, 2vjc:B, 2vjd:A, 2vjd:B, 1vot:A, 2vq6:A, 1vxo:A, 1vxr:A, 1w4l:A, 1w6r:A, 2w6c:X, 4w63:A, 1w76:A, 1w76:B, 2wfz:A, 2wg0:A, 2wg1:A, 2wg2:A, 4x3c:A, 2xi4:A, 2xi4:B, 1zgb:A, 1zgc:A, 1zgc:B, 3zv7:A
8 7mqa:NS 914 62 0.1141 0.0230 0.3387 8.2 6o16:A, 6o16:B
9 5m3f:A 1459 77 0.1196 0.0151 0.2857 8.8 5n61:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218