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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEEDNSTVIWFWLHKGEAQRCP
SCGTHYKLVPHQL

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abk:F 98 93 1.0000 0.9490 1.0000 1.02e-67 3abk:S, 3abl:F, 3abl:S, 3abm:F, 3abm:S, 3ag1:F, 3ag1:S, 3ag2:F, 3ag2:S, 3ag3:F, 3ag3:S, 3ag4:F, 3ag4:S, 3asn:F, 3asn:S, 3aso:F, 3aso:S, 5b1a:F, 5b1a:S, 5b1b:F, 5b1b:S, 5b3s:F, 5b3s:S, 7coh:F, 7coh:S, 7cp5:F, 7cp5:S, 8d4t:S, 7d5w:F, 7d5w:S, 7d5x:F, 7d5x:S, 7dgq:A5, 7dgr:A6, 7dgs:B2, 7dkf:F3, 2dyr:F, 2dyr:S, 2dys:F, 2dys:S, 2eij:F, 2eij:S, 2eik:F, 2eik:S, 2eil:F, 2eil:S, 2eim:F, 2eim:S, 2ein:F, 2ein:S, 7ev7:F, 7ev7:S, 8gbt:F, 8gbt:S, 8gcq:F, 8gcq:S, 5gup:Ap, 8gvm:F, 8gvm:S, 8h8r:F, 8h8r:S, 8h8s:F, 8h8s:S, 8ijn:F, 8ijn:S, 5iy5:F, 5iy5:S, 6j8m:F, 6j8m:S, 6juw:F, 6juw:S, 6jy3:F, 6jy4:F, 5luf:3, 6nkn:F, 6nkn:S, 6nmf:F, 6nmf:S, 6nmp:F, 6nmp:S, 1occ:F, 1occ:S, 1oco:F, 1oco:S, 1ocr:F, 1ocr:S, 1ocz:F, 1ocz:S, 2occ:F, 2occ:S, 7thu:F, 7thu:S, 7tie:F, 7tie:S, 7tih:F, 7tih:S, 7tii:F, 7tii:S, 8ugh:4F, 8ugi:4F, 8ugj:4F, 8ugj:8F, 8ugl:4F, 8ugn:4F, 8ugn:8F, 8ugr:4F, 8ugr:8F, 1v54:F, 1v54:S, 1v55:F, 1v55:S, 7vuw:F, 7vuw:S, 7vvr:F, 7vvr:S, 7w3e:F, 7w3e:S, 5w97:F, 5w97:f, 5wau:F, 5wau:f, 3wg7:F, 3wg7:S, 5x19:F, 5x19:S, 5x1b:F, 5x1b:S, 5x1f:F, 5x1f:S, 3x2q:F, 3x2q:S, 5xdq:F, 5xdq:S, 5xdx:F, 5xdx:S, 7xma:F, 7xma:S, 7xmb:F, 7xmb:S, 5xth:2, 5xti:2, 5xti:B2, 7y44:F, 7y44:S, 2y69:F, 2y69:S, 2ybb:Q, 7ypy:F, 7ypy:S, 5z84:F, 5z84:S, 5z85:F, 5z85:S, 5z86:F, 5z86:S, 5zco:F, 5zco:S, 5zcp:F, 5zcp:S, 5zcq:F, 5zcq:S, 2zxw:F, 2zxw:S
2 7o37:f 95 93 0.8710 0.8526 0.8710 1.70e-60 7o3c:f, 7o3e:f, 8pw5:s, 8pw5:f, 8pw6:s, 8pw7:s
3 7jro:e 94 81 0.3763 0.3723 0.4321 5.45e-17 7jrp:e
4 8c8q:D 121 90 0.4086 0.3140 0.4222 1.25e-16 8q1b:d
5 8dh6:d 121 92 0.3656 0.2810 0.3696 3.89e-11 6hu9:d, 6hu9:p, 6t0b:d, 6t0b:q, 6t15:d, 6ymx:d, 6ymy:d, 7z10:d
6 8b6h:DD 558 70 0.2903 0.0484 0.3857 0.001 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
7 7ob9:A 1535 35 0.1290 0.0078 0.3429 0.21 7oba:A
8 7vbc:A 1477 30 0.1183 0.0074 0.3667 0.23 7vba:A, 7vbb:A
9 7obb:A 1510 30 0.1183 0.0073 0.3667 0.24
10 3k2h:A 503 35 0.1613 0.0298 0.4286 0.57 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B
11 7qv8:A 208 22 0.1290 0.0577 0.5455 7.2
12 2lcq:A 161 14 0.0753 0.0435 0.5000 8.5
13 8dh2:L 741 28 0.1183 0.0148 0.3929 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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