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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGVEGGGTRSEVLADGLSTNHIGTDKCVERINEMGVDPLVPLRSLGLSLSGGEDAGRILIEELRDRFPYLSESYLITTDA
AGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAM
FHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILC
VGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHMDYSANAIAFYSYTFS

The query sequence (length=310) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ch6:A 343 339 1.0000 0.9038 0.9145 0.0 2ch6:B, 2ch6:C, 2ch6:D
2 2e2o:A 299 251 0.1935 0.2007 0.2390 1.47e-07 2e2p:A, 2e2p:B, 2e2q:A, 2e2q:B
3 5f7q:E 396 110 0.1000 0.0783 0.2818 0.10 5f7p:E, 5f7p:A, 5f7q:C, 5f7q:J, 5f7q:L, 5f7r:E, 5f7r:A
4 6bvd:A 429 116 0.0871 0.0629 0.2328 0.63 6bvd:B
5 8ow7:A 277 74 0.0645 0.0722 0.2703 0.69 8ow7:B, 8ow7:C, 8ow7:D, 8ow7:E, 8ow7:F
6 8oz1:A 373 64 0.0774 0.0643 0.3750 0.80 6ha9:A, 6ha9:B, 6haa:A, 6haa:B, 5oyd:A, 5oyd:B, 5oye:A, 5oye:B
7 8oqx:A 283 61 0.0677 0.0742 0.3443 1.8 8oqx:B, 8ow9:B, 8ow9:A, 8ow9:D, 8ow9:E
8 8u87:A 621 43 0.0613 0.0306 0.4419 3.6 8u7y:A, 8u7y:B, 8u85:A, 8u85:C, 8u86:A, 8u86:C, 8u87:C
9 1sli:A 679 86 0.0742 0.0339 0.2674 6.2 2sli:A, 3sli:A, 4sli:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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