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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGSTIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSTAYSVPCMFSY
LGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDD
FVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPVCEGNELAKCEHQSLINAYDNALLATDDFIAQSIQWLQTHSNA
YDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKD
RTAFIR

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yle:A 331 323 0.9908 0.9758 1.0000 0.0 5gov:B, 5gov:A, 5grr:A, 5k4p:A, 6li4:A, 6li4:B, 6li6:A, 6li6:B, 5lrm:A, 5lrn:A, 5lrn:B, 7yjp:A, 7yjp:B, 7yjq:A, 7yjq:B, 7yjr:A, 7yjr:B, 7yjs:A, 7yjs:B, 7yjt:A, 7yjt:B, 5ylc:A, 5ylf:A, 5zjv:A
2 6a7w:A 324 323 0.8650 0.8704 0.8731 0.0 6a7w:B, 5mx9:A, 6sut:A
3 6bnf:A 336 330 0.6779 0.6577 0.6697 3.55e-164 6bnc:A, 6bnc:B, 6bnd:A, 6bnd:B
4 5fgn:A 536 314 0.4049 0.2463 0.4204 2.33e-71 4kav:A, 4kay:A, 4kay:B
5 4tn0:A 308 310 0.3957 0.4188 0.4161 3.23e-71 4tn0:B, 4tn0:C
6 6a83:A 357 286 0.2147 0.1961 0.2448 5.09e-10 5zzu:A, 5zzu:B, 5zzu:C
7 7ebp:A 526 58 0.0521 0.0323 0.2931 0.019 7ebp:B, 7ebq:A
8 4upl:A 555 68 0.0552 0.0324 0.2647 0.28 4upl:C
9 7p24:AAA 494 80 0.0675 0.0445 0.2750 0.29
10 7pth:A 517 81 0.0767 0.0484 0.3086 0.36 6fny:A, 6fny:B, 6fny:C, 6fny:D, 6fny:E, 6fny:F, 6fny:G, 6fny:H, 6g5z:A, 6g5z:B, 6g5z:C, 6g5z:D, 6g60:A, 6g60:B, 6g60:C, 6g60:D, 7pth:B, 7pth:C, 7pth:D, 7ptj:A, 7ptj:B, 7ptj:C, 7ptj:D
11 5g2v:A 494 63 0.0521 0.0344 0.2698 0.40
12 2vqr:A 512 58 0.0460 0.0293 0.2586 1.3
13 5egh:B 393 35 0.0399 0.0331 0.3714 2.5 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
14 4fw8:A 427 54 0.0429 0.0328 0.2593 3.5 4fw8:B, 4fw8:C, 4fw8:D, 3q6i:A, 3q6i:B, 3q6i:C, 3q6i:D, 3v1u:A
15 6hhm:A 459 52 0.0368 0.0261 0.2308 4.3
16 2w8s:B 513 58 0.0460 0.0292 0.2586 5.3 2w8s:A, 2w8s:C, 2w8s:D
17 6j66:B 476 92 0.0767 0.0525 0.2717 5.6 6j66:A
18 8qcf:K 915 68 0.0491 0.0175 0.2353 5.9
19 5l9w:b 649 51 0.0521 0.0262 0.3333 6.2
20 7l7x:AAA 395 74 0.0491 0.0405 0.2162 6.7 7l7x:BBB
21 6u7l:A 460 28 0.0307 0.0217 0.3571 7.0 6u7l:B, 6u7l:C, 6u7l:D
22 4if2:A 324 35 0.0368 0.0370 0.3429 8.3
23 4xgc:C 567 35 0.0399 0.0229 0.3714 8.4
24 6jq9:B 483 104 0.0859 0.0580 0.2692 8.6 6byp:A, 6byp:B, 6byt:A, 6byt:B, 6byx:A, 6byx:B, 6jq9:A
25 7jgs:C 614 35 0.0399 0.0212 0.3714 9.9 7jgr:C, 7jk2:C, 7jk3:C, 7jk4:C, 7jk5:C, 7jk6:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218