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BioLiP
>protein
GGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5b5e:j 40 36 1.0000 0.9000 1.0000 3.04e-18 3a0b:J, 2axt:j, 5b5e:J, 5b66:J, 5b66:j, 7cji:J, 7cji:j, 7cjj:J, 7cjj:j, 7cou:J, 7cou:j, 7d1t:J, 7d1t:j, 7d1u:J, 7d1u:j, 5e79:J, 5e79:j, 5e7c:J, 5e7c:j, 7eda:J, 9evx:j, 8gn0:J, 8gn0:j, 8gn1:J, 8gn1:j, 8gn2:J, 8gn2:j, 5gth:J, 5gth:j, 5gti:J, 5gti:j, 5h2f:J, 5h2f:j, 4il6:J, 4il6:j, 8ir5:J, 8ir5:j, 8ir6:J, 8ir6:j, 8ir7:J, 8ir7:j, 8ir8:J, 8ir8:j, 8ir9:J, 8ir9:j, 8ira:J, 8ira:j, 8irb:J, 8irb:j, 8irc:J, 8irc:j, 8ird:J, 8ird:j, 8ire:J, 8ire:j, 8irf:J, 8irf:j, 8irg:J, 8irg:j, 8irh:J, 8irh:j, 8iri:J, 8iri:j, 6jlj:J, 6jlj:j, 6jlk:J, 6jlk:j, 6jll:j, 6jll:J, 6jlm:J, 6jlm:j, 6jln:J, 6jln:j, 6jlo:J, 6jlo:j, 6jlp:J, 6jlp:j, 3kzi:J, 4pbu:J, 4pbu:j, 7rf4:J, 4rvy:J, 4rvy:j, 4ub6:J, 4ub6:j, 4ub8:J, 4ub8:j, 5v2c:J, 5v2c:j, 4v82:BJ, 6w1q:J, 5ws5:J, 5ws5:j, 5ws6:J, 5ws6:j, 3wu2:J, 3wu2:j, 7yq2:J, 7yq2:j, 7yq7:J, 7yq7:j, 5zzn:J, 5zzn:j
2 6j3y:J 34 34 0.6111 0.6471 0.6471 3.89e-10 6j3y:j, 6j3z:J, 6j3z:j, 6j40:J, 6j40:j, 7vd5:J, 7vd5:j
3 8xr6:J 34 34 0.5833 0.6176 0.6176 4.15e-10 8xr6:j
4 7pin:J 36 35 0.6111 0.6111 0.6286 4.26e-09 7pin:J1, 7piw:J1, 7pnk:J
5 4yuu:j2 33 33 0.5278 0.5758 0.5758 1.09e-07 4yuu:J1, 4yuu:j1
6 5tcd:A 388 25 0.2778 0.0258 0.4000 5.9 5udy:A
7 7k88:A 501 32 0.3056 0.0220 0.3438 6.1 7k8g:A, 3kvc:A, 3kvc:B
8 4f30:A 521 32 0.3056 0.0211 0.3438 6.1 8doc:A, 4f2z:A, 4f2z:E, 4f3a:A, 4f3d:A, 4f3d:B, 3fsn:A, 3fsn:B, 7k88:B, 7k89:A, 7k89:B, 7k8g:B, 7l0e:A, 7l0e:B, 4rsc:A, 4rsc:B, 4rse:A, 4rse:B, 4ryx:A, 4ryy:A, 4ryy:B, 4ryz:A, 4ryz:B, 5ul5:A, 5ul5:B, 5ulg:A, 5ulg:B, 4zhk:A, 4zhk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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