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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEK
IAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPD
GYWIEILNPNKMATLM

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wt0:A 185 176 1.0000 0.9514 1.0000 1.98e-132 1bh5:A, 1bh5:B, 1bh5:C, 1bh5:D, 1fro:A, 1fro:B, 1fro:C, 1fro:D, 4kyh:A, 4kyh:B, 4kyk:B, 6l0u:B, 4opn:A, 4opn:B, 4pv5:A, 4pv5:B, 1qin:A, 1qin:B, 1qip:A, 1qip:B, 1qip:D, 1qip:C, 3vw9:A, 3vw9:B, 3w0t:A, 3w0t:B, 3w0t:C, 3w0t:D, 3w0u:A, 3w0u:B, 7wsz:A, 7wsz:B, 7wt0:B, 7wt1:A, 7wt1:B, 7wt2:A, 7wt2:B, 4x2a:A, 4x2a:B, 2za0:A, 2za0:B
2 4kyk:A 179 176 0.9034 0.8883 0.9034 2.03e-121 6l0u:A
3 4mtt:A 128 147 0.2955 0.4062 0.3537 3.01e-23 4mtr:A, 4mtr:B, 4mts:B, 4mtt:B
4 1fa5:A 128 146 0.2784 0.3828 0.3356 3.25e-23 1fa5:B, 1fa6:A, 1fa6:B
5 2c21:A 139 149 0.2841 0.3597 0.3356 4.96e-17 2c21:B, 2c21:C, 2c21:D, 2c21:E, 2c21:F
6 6bnn:A 282 153 0.2670 0.1667 0.3072 1.27e-14 6bnx:A, 6bnz:A, 5d7z:A
7 6bnn:A 282 149 0.2614 0.1631 0.3087 1.01e-13 6bnx:A, 6bnz:A, 5d7z:A
8 3l7t:B 133 147 0.2273 0.3008 0.2721 0.025
9 2o7q:A 501 41 0.0966 0.0339 0.4146 0.054 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
10 2qh0:A 129 56 0.1023 0.1395 0.3214 1.4
11 6s6b:J 475 45 0.0852 0.0316 0.3333 1.6 6s8b:J, 6s8e:J, 6s91:J, 6sh8:J, 6shb:J, 6sic:J
12 5x7u:A 546 74 0.1307 0.0421 0.3108 1.7
13 7q2a:B 352 46 0.0852 0.0426 0.3261 2.9 3lm4:A, 3lm4:B, 3lm4:C, 3lm4:D, 7q2a:A, 7q2a:C, 7q2a:D
14 8jbw:A 364 45 0.0739 0.0357 0.2889 3.3
15 8jun:A 678 80 0.1307 0.0339 0.2875 4.0 8jun:B
16 7nf4:A 504 33 0.0739 0.0258 0.3939 6.0 8crd:A, 6ev3:A, 6ev4:A, 6ev5:A, 6ev6:A, 6ev7:A, 6ev8:A, 6ev9:A, 6eva:A, 6evb:A, 6evc:A, 6evd:A, 7nf3:A, 7nf4:B, 8oed:A, 8oeh:A, 8oeo:A, 6r2p:A, 6r2r:A, 6r2t:A, 6r2z:A, 6r30:A, 6r32:A, 6r33:A, 6r34:A, 6r3f:A, 6r3g:A, 6r3i:A, 6r3j:A, 6r3l:A, 6r3n:A, 6r3o:A, 6tib:AAA, 6tic:AAA, 6tie:AAA, 6tih:AAA, 6tij:AAA, 6til:AAA, 6tin:AAA, 6tio:AAA, 4za4:A, 4za5:A, 4za7:A, 4za8:A, 4za9:A, 4zaa:A, 4zab:A
17 8t4e:B 551 50 0.0739 0.0236 0.2600 7.9 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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