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BioLiP
>protein
GGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRV
SLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGEVPLPSFWG
GFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jnw:A 214 199 1.0000 0.9299 1.0000 1.10e-149 1dnl:A, 1g76:A, 1g77:A, 1g78:A, 1g79:A, 6ylz:AAA, 6ymh:BBB
2 1wv4:A 162 199 0.7688 0.9444 0.7688 1.23e-105 1wv4:B, 6ymh:AAA
3 1ci0:A 205 203 0.4271 0.4146 0.4187 1.01e-48 1ci0:B
4 1nrg:A 213 178 0.3920 0.3662 0.4382 2.79e-46 6h00:A, 3hy8:A, 8qyt:A, 8qyw:A
5 4hmt:B 207 192 0.3116 0.2995 0.3229 3.08e-34 4hms:A, 4hms:B, 4hmt:A, 4hmu:A, 4hmu:B, 4hmv:A, 4hmv:B, 1ty9:A, 1ty9:B
6 1t9m:A 204 191 0.3116 0.3039 0.3246 3.18e-31 1t9m:B
7 4hmw:B 205 194 0.2965 0.2878 0.3041 2.40e-26 4hmw:A, 4hmx:A, 4hmx:B
8 2i02:A 140 66 0.0955 0.1357 0.2879 0.55 2i02:B
9 4fb3:A 115 65 0.0854 0.1478 0.2615 0.55 4fb3:B, 4fb3:E
10 3jd5:I 311 137 0.1759 0.1125 0.2555 0.61 6neq:I, 6nf8:I
11 8jg7:E 409 90 0.1206 0.0587 0.2667 1.4 8jg7:A, 8jg7:C, 8jg7:D
12 7rzb:A 138 52 0.0804 0.1159 0.3077 1.6
13 2xgt:B 433 61 0.0905 0.0416 0.2951 2.7 2xgt:A, 2xti:A, 2xti:B
14 5ck5:A 221 42 0.0804 0.0724 0.3810 4.2 5ck4:A, 5ck4:B, 5ck5:B, 5ck5:C, 5ck5:D
15 3ec6:A 129 76 0.1307 0.2016 0.3421 8.5
16 6hiv:CH 273 14 0.0553 0.0403 0.7857 9.8 6hiw:CH, 6hiy:CH, 7pub:CH
17 6sga:CH 222 14 0.0553 0.0495 0.7857 9.8 7pua:CH, 6sgb:CH
18 7p2e:G 330 107 0.1307 0.0788 0.2430 9.8 7a5f:G6, 7a5g:G6, 7a5i:G6, 7a5k:G6, 8any:AG, 8csp:G, 8csq:G, 8csr:G, 8css:G, 8cst:G, 8csu:G, 3j9m:AG, 8k2a:SI, 7l08:AG, 6nu2:AG, 6nu3:AG, 7og4:AG, 8oir:Ag, 8ois:Ag, 7pnx:G, 7pny:G, 7pnz:G, 7po0:G, 7po1:G, 7po2:G, 7po3:G, 7qi4:AG, 7qi5:AG, 7qi6:AG, 8qrk:G, 8qrl:G, 8qrm:G, 8qrn:G, 6rw4:G, 6rw5:G, 6vlz:AG, 6vmi:AG, 8xt0:SI, 8xt2:SI, 6zm5:AG, 6zm6:AG, 6zs9:AG, 6zsa:AG, 6zsb:AG, 6zsc:AG, 6zsd:AG, 6zse:AG, 6zsg:AG

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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