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BioLiP
>protein
GGLEEIAQGLEEIAKGLKKIAWGLKKIAQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8qac:C 30 30 1.0000 1.0000 1.0000 3.75e-13
2 8qab:A 30 30 0.8667 0.8667 0.8667 4.82e-09 8qab:D
3 7a1t:C 30 26 0.7333 0.7333 0.8462 6.43e-08 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
4 7a1t:C 30 24 0.6000 0.6000 0.7500 3.56e-04 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
5 7bat:B 30 26 0.6667 0.6667 0.7692 1.18e-07 7baw:D, 7baw:F
6 5ez8:E 30 26 0.6000 0.6000 0.6923 1.02e-05 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
7 5ez8:E 30 24 0.4333 0.4333 0.5417 1.8 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
8 7qwa:C 30 26 0.6000 0.6000 0.6923 1.54e-05 7qwa:D
9 7qwa:C 30 24 0.5000 0.5000 0.6250 0.026 7qwa:D
10 4pnb:D 30 26 0.5333 0.5333 0.6154 1.96e-05
11 4pnb:D 30 24 0.3333 0.3333 0.4167 8.1
12 6eiz:A 30 26 0.5667 0.5667 0.6538 3.55e-05 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
13 6eiz:A 30 24 0.4667 0.4667 0.5833 0.57 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
14 6g6a:B 30 26 0.5000 0.5000 0.5769 6.09e-05 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
15 6g6a:B 30 24 0.3667 0.3667 0.4583 7.3 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
16 8b16:A 30 25 0.6000 0.6000 0.7200 7.50e-05 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
17 7bau:D 30 25 0.5000 0.5000 0.6000 4.49e-04 7bau:J, 7bau:E, 7bau:G, 7bau:I
18 7bau:D 30 23 0.3333 0.3333 0.4348 6.6 7bau:J, 7bau:E, 7bau:G, 7bau:I
19 5ez9:F 30 26 0.4667 0.4667 0.5385 0.001 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
20 6g68:H 30 26 0.4000 0.4000 0.4615 0.001 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
21 6q5j:D 30 30 0.6333 0.6333 0.6333 0.002 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
22 4kvu:B 30 30 0.6000 0.6000 0.6000 0.003 4kvv:H, 4kvv:L
23 4h8m:A 30 30 0.6000 0.6000 0.6000 0.004
24 8dsh:B 473 21 0.3000 0.0190 0.4286 2.4 6atb:A, 6atb:B, 6atb:C, 6atb:D, 6azj:A, 6azj:B, 6b75:A, 6b75:B, 6b75:D, 6b76:A, 6b76:B, 6b76:C, 6b76:D, 3dgr:A, 3dgr:B, 3dhd:A, 3dhd:B, 3dhf:A, 3dhf:B, 3dkj:A, 3dkj:B, 3dkl:A, 3dkl:B, 8dsc:A, 8dsc:B, 8dsd:A, 8dsd:B, 8dse:A, 8dse:B, 8dsh:A, 8dsi:A, 8dsi:B, 8dsm:A, 8dsm:B, 8dsm:C, 8dsm:D, 8dtj:A, 8dtj:B, 2e5c:A, 2e5c:B, 2e5d:A, 2e5d:B, 6e68:A, 6e68:B, 7enq:A, 7enq:B, 7enq:C, 7enq:D, 8f7l:A, 8f7l:B, 3g8e:A, 3g8e:B, 2g96:A, 2g96:B, 2g97:A, 2g97:B, 2gvg:A, 2gvg:C, 2gvg:B, 2gvg:D, 2gvg:E, 2gvg:F, 2gvj:A, 2gvj:B, 2h3d:A, 2h3d:B, 8ivu:A, 8ivu:B, 8ivu:C, 8ivu:D, 4jnm:A, 4jnm:B, 4jr5:A, 4jr5:B, 4kfn:A, 4kfn:B, 4kfo:A, 4kfo:B, 4kfp:A, 4kfp:B, 5kit:A, 5kit:B, 4l4l:A, 4l4l:B, 4l4m:A, 4l4m:B, 4lts:A, 4lts:B, 4lv9:A, 4lv9:B, 4lva:A, 4lva:B, 4lvb:A, 4lvb:B, 4lvd:B, 4lvd:A, 4lvf:A, 4lvf:B, 4lvg:A, 4lvg:B, 4lww:A, 4lww:B, 5lx3:A, 5lx3:B, 5lx5:A, 5lx5:B, 4m6p:A, 4m6p:B, 4m6q:A, 4m6q:B, 4n9b:A, 4n9b:B, 4n9c:A, 4n9c:B, 4n9d:A, 4n9d:B, 4n9e:A, 4n9e:B, 5nsd:A, 5nsd:B, 4o0z:A, 4o0z:B, 4o10:A, 4o10:B, 4o12:A, 4o12:B, 4o13:A, 4o13:B, 4o14:A, 4o14:B, 4o15:A, 4o15:B, 4o16:A, 4o17:A, 4o17:B, 4o18:A, 4o18:B, 4o19:A, 4o19:B, 4o1a:A, 4o1a:B, 4o1b:A, 4o1b:B, 4o1c:A, 4o1c:B, 4o1d:A, 4o1d:B, 4o28:A, 4o28:B, 6peb:A, 6peb:B, 6peb:C, 7ppe:A, 7ppe:B, 7ppf:A, 7ppf:B, 7ppg:A, 7ppg:B, 7ppg:C, 7ppg:D, 7pph:A, 7pph:B, 7ppi:A, 7ppi:B, 7ppi:C, 7ppi:D, 7q8t:A, 7q8t:B, 6ta0:A, 6ta0:B, 6ta2:B, 6ta2:A, 6tac:A, 6tac:B, 8tm7:A, 8tm7:B, 5u2m:A, 5u2m:B, 5u2n:A, 5u2n:B, 5upe:A, 5upe:B, 5upf:A, 5upf:B, 5wi0:A, 5wi0:B, 5wi1:A, 5wi1:B, 4wq6:A, 4wq6:B
25 4h8g:F 30 30 0.3667 0.3667 0.3667 2.5 4h8g:H
26 3gfv:B 285 19 0.3000 0.0316 0.4737 4.3
27 7u2s:A 248 21 0.3333 0.0403 0.4762 4.8 7u2s:B
28 3b70:A 357 16 0.2667 0.0224 0.5000 7.1 3b6z:A, 3gqv:A
29 8jus:A 335 17 0.2667 0.0239 0.4706 8.4 8jus:B
30 4aro:A 401 14 0.2667 0.0200 0.5714 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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