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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGKTVDQKTYSVGDTVKYTITYKNAVNYHGTEKVYQYVIKDTMPSASVVDLNEGSYEVTITDGSGNITTLTQGSEKATGK
YNLLEENNNFTITIPWAATNTPDDFFYKGINTITVTYTGVLKSGAKPGSADLPENTNIATINPNTSNDDPGQKVTVRDGQ
ITIKKIDGSTKASLQGAIFVLKNATGQFLNFNDTNNVEWGTEANATEYTTGADGIITITGLKEGTYYLVEKKAPLGYNLL
DNSQKVILGDGATDTTNSDNLLVNPTVENNKGTELPS

The query sequence (length=277) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uzg:A 277 277 1.0000 1.0000 1.0000 0.0
2 3kpt:B 355 159 0.1733 0.1352 0.3019 2.91e-04
3 3kpt:B 355 75 0.0939 0.0732 0.3467 0.031
4 5fgs:D 123 116 0.1191 0.2683 0.2845 5.58e-04
5 2ww8:A 815 92 0.1047 0.0356 0.3152 0.004
6 2ww8:A 815 79 0.0975 0.0331 0.3418 1.3
7 4p0d:A 471 263 0.2310 0.1359 0.2433 0.017
8 3qdh:A 271 138 0.1697 0.1734 0.3406 0.14
9 3uxf:A 449 125 0.1408 0.0869 0.3120 0.17
10 8r3r:A 658 38 0.0578 0.0243 0.4211 0.32 8r3r:B, 8r3r:C, 8r3r:D
11 4hss:A 411 127 0.1336 0.0900 0.2913 0.46 4hsq:A, 4hss:B
12 4q8r:A 241 20 0.0469 0.0539 0.6500 1.2
13 3htl:X 422 291 0.2491 0.1635 0.2371 1.3 3hr6:A, 7k7f:A
14 1r61:A 205 115 0.1083 0.1463 0.2609 1.4 3krv:B, 1r61:B
15 8bws:C 335 67 0.0578 0.0478 0.2388 1.6 7z0h:C, 7z2z:C, 7z30:C, 7z31:C
16 6fwv:A 522 89 0.1119 0.0594 0.3483 2.1 6fwv:B
17 7vrg:A 540 137 0.1191 0.0611 0.2409 2.3 5gqb:A, 6jmn:A, 7vrg:B
18 5gxe:A 331 69 0.0722 0.0604 0.2899 3.6 5gxe:B
19 3m49:A 665 86 0.0866 0.0361 0.2791 5.4 3hyl:A, 3hyl:B, 3m49:B
20 4hxy:B 430 41 0.0542 0.0349 0.3659 5.6 4hxy:A
21 4oy6:A 186 52 0.0578 0.0860 0.3077 8.4 4oy8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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