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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA
KEAKEAPVEVKKFVKIGRPGYKVTKQLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPFW
THWNRETKQFFLQ

The query sequence (length=173) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i0r:v 173 173 1.0000 1.0000 1.0000 5.93e-132 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
2 8ch6:I 185 188 0.8439 0.7892 0.7766 7.31e-94 7abi:F, 7onb:M, 7qtt:I, 5z56:v, 5z57:v
3 7dco:v 207 169 0.2717 0.2271 0.2781 3.82e-11 5gm6:I, 5zwm:v, 5zwo:v
4 5nrl:U 196 143 0.2370 0.2092 0.2867 4.89e-10
5 6g90:U 196 148 0.2312 0.2041 0.2703 4.36e-08 7oqb:U, 7oqe:U
6 8qzs:r 114 36 0.0751 0.1140 0.3611 0.010 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
7 1zu1:A 127 46 0.0983 0.1339 0.3696 0.095
8 8idf:A 459 40 0.0867 0.0327 0.3750 0.13
9 1deh:A 374 45 0.0925 0.0428 0.3556 4.5 1deh:B, 1hdx:A, 1hdx:B, 1hdy:A, 1hdy:B, 1hdz:A, 1hdz:B, 1hso:A, 1hso:B, 1hsz:A, 1hsz:B, 1ht0:A, 1ht0:B, 1htb:A, 1htb:B, 3hud:A, 3hud:B, 1u3t:A, 1u3t:B, 1u3u:A, 1u3u:B, 1u3v:A, 1u3v:B, 1u3w:A, 1u3w:B
10 6yxy:AE 434 56 0.1214 0.0484 0.3750 5.3 7aih:A, 7am2:A, 7ane:A, 7aoi:AE, 6yxx:AE
11 6jbc:A 295 50 0.1098 0.0644 0.3800 6.4 6jbd:A
12 1xed:A 111 39 0.0694 0.1081 0.3077 7.3 1xed:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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