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BioLiP
>protein
GGKGKKKKKRIFTKPKKPTHRHKLEKMRALKYFKVTENDDGSYKVERTRQDCPHPQCGAGVYMAQHKDRQYCGKCHLTYK

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8rxh:Sf 80 80 1.0000 1.0000 1.0000 5.87e-55 6az1:f
2 7ase:j 79 62 0.6750 0.6835 0.8710 8.00e-38 5opt:j, 8ova:A9, 4v8m:A9
3 7old:Sf 74 75 0.5250 0.5676 0.5600 6.66e-21 7olc:Sf, 8oo0:Sf, 7r81:g2, 7z3n:Sf, 7z3o:Sf
4 8c3a:h 70 74 0.5000 0.5714 0.5405 6.61e-20 8c3a:DS, 8cq7:h, 8cq7:DS, 8cqw:h, 8cqw:DS, 8cre:h, 8cre:DS, 8oeq:h, 8oeq:DS, 7pzy:g, 7q08:g, 7q0f:g, 7q0p:g, 7q0r:g
5 5dat:e1 76 77 0.5125 0.5395 0.5325 1.70e-19 7a1g:N, 7b7d:N, 8bn3:E1, 8bqd:N, 8bqx:N, 8cah:N, 8cas:O, 5dat:E1, 5dc3:E1, 5dc3:e1, 5dge:E1, 5dge:e1, 5dgf:E1, 5dgf:e1, 5dgv:E1, 5dgv:e1, 6eml:N, 8eub:Bf, 8evp:Bf, 8evq:Bf, 8evr:Bf, 8evs:Bf, 8evt:Bf, 8ewb:Bf, 8ewc:Bf, 5fci:E1, 5fci:e1, 5fcj:E1, 5fcj:e1, 6gq1:AW, 6gqb:AW, 6gqv:AW, 6hhq:g, 6hhq:e1, 5i4l:E1, 5i4l:e1, 6i7o:N, 6i7o:Nb, 3j6x:31, 3j6y:31, 3j77:31, 3j78:31, 5juo:CC, 5jup:CC, 5jus:CC, 5jut:CC, 5juu:CC, 8k2d:Sf, 8k82:Sf, 5lyb:E1, 5lyb:e1, 5m1j:f2, 5mc6:N, 5mei:e1, 5mei:g, 7mpi:Bf, 7mpj:Bf, 7n8b:Bf, 5ndg:E1, 5ndw:E1, 5ndw:e1, 7nrc:SN, 7nrd:SN, 5obm:E1, 5obm:e1, 5on6:e1, 5on6:g, 7osa:eS31, 6q8y:N, 6rbe:f, 7rr5:Sf, 6s47:Bg, 6snt:f, 6sv4:N, 6sv4:Nb, 6sv4:Nc, 6t4q:Sf, 6t7i:Sf, 6t7t:Sf, 6t83:fb, 6t83:6, 5tbw:g, 5tbw:e1, 6tb3:N, 5tga:E1, 5tga:e1, 5tgm:E1, 5tgm:e1, 6tnu:N, 4u3m:E1, 4u3m:e1, 4u3n:E1, 4u3n:e1, 4u3u:E1, 4u3u:e1, 4u4n:E1, 4u4n:e1, 4u4o:E1, 4u4o:e1, 4u4q:E1, 4u4q:e1, 4u4r:E1, 4u4r:e1, 4u4u:E1, 4u4u:e1, 4u4y:E1, 4u4y:e1, 4u4z:E1, 4u4z:e1, 4u50:E1, 4u50:e1, 4u51:E1, 4u51:e1, 4u52:E1, 4u52:e1, 4u53:E1, 4u53:e1, 4u55:E1, 4u55:e1, 4u56:E1, 4u56:e1, 4u6f:E1, 4u6f:e1, 6wdr:f, 5wyj:Sg, 8y0u:Sf, 6z6j:Sf, 6z6k:Sf, 6zce:g, 7zpq:Af, 7zrs:Af, 6zu9:O, 7zuw:Af, 7zux:Df, 6zvi:Q, 7zw0:sN
6 6zj3:Sf 64 67 0.4875 0.6094 0.5821 1.98e-19
7 6fyx:f 74 76 0.4750 0.5135 0.5000 2.88e-19 6fyy:f, 6gsm:f, 6gsn:f, 8i7j:f, 5it7:f, 5it9:f, 3j80:f, 3j81:f, 3jam:f, 3jap:f, 8rw1:f, 8s8d:f, 8s8e:f, 8s8f:f, 8s8g:f, 8s8h:f, 8s8i:f, 8s8j:f
8 8g5z:Sf 75 76 0.5125 0.5467 0.5395 6.15e-19 7a01:Q3, 7a09:U, 5a2q:f, 5aj0:Bf, 8bhf:g3, 8btk:AC, 4d5l:f, 4d61:f, 6d90:gg, 6d9j:gg, 9f1b:AC, 9f1c:AC, 9f1d:AC, 6fec:p, 5flx:f, 6g18:f, 6g51:f, 6g53:f, 6g5h:f, 6g5i:f, 8g5y:Sf, 8g60:Sf, 8g61:Sf, 8g6j:Sf, 8glp:Sf, 6gz3:Bf, 6gz4:Bf, 6gz5:Bf, 6hcf:g1, 6hcj:g2, 6hcm:g1, 6hcq:g2, 8ifd:3R, 8ife:3R, 6ip5:3R, 6ip6:3R, 6ip8:3R, 3j7p:Sf, 3j7r:Sf, 3jag:ff, 3jah:ff, 3jai:ff, 3jaj:Sf, 3jan:Sf, 7jqb:g, 7jqc:g, 5k0y:p, 8k2c:Sf, 7k5i:f, 4kzx:f, 4kzy:f, 4kzz:f, 5lks:Sf, 7ls1:U3, 7ls2:U3, 5lzs:ff, 5lzt:ff, 5lzu:ff, 5lzv:ff, 5lzw:ff, 5lzx:ff, 5lzy:ff, 5lzz:ff, 7mdz:ff, 7mq8:NT, 7mq9:NT, 7mqa:NT, 6mtb:ff, 6mtc:ff, 6mtd:ff, 6mte:ff, 7nwg:g2, 7nwh:ff, 7nwi:ff, 7o7y:AC, 7o7z:AC, 7o80:AC, 7o81:AC, 5oa3:f, 6ole:Sf, 6olf:Sf, 6olg:Bf, 6oli:Sf, 6olz:Bf, 6om0:Sf, 6om7:Sf, 8oz0:p, 8p03:f, 8p09:f, 8p2k:AC, 6p4g:g, 6p4h:g, 6p5i:g, 6p5j:g, 6p5k:g, 6p5n:g, 8pj1:k, 8pj2:k, 8pj3:k, 8pj4:k, 8pj5:k, 8pj6:k, 8ppk:f, 8ppl:Af, 8q7z:AC, 8q87:AC, 7qgg:Sf, 8qoi:Sf, 7qp6:k, 7qp7:k, 6qzp:Sf, 7r4x:f, 6r5q:0, 6r6g:0, 6r6p:0, 6r7q:0, 8scb:ff, 6sgc:g1, 7syg:g, 7syh:g, 7syi:g, 7syj:g, 7syk:g, 7syl:g, 7sym:g, 7syn:g, 7syo:g, 7syp:g, 7syq:g, 7syr:g, 7sys:g, 7syt:g, 7syu:g, 7syv:g, 7syw:g, 7syx:g, 5t2c:AH, 8t4s:f, 7toq:AS31, 7tor:AS31, 7tql:g, 4ug0:Sf, 4ujc:Cf, 4ujd:Cf, 4uje:Bf, 4v6x:Af, 5vyc:f1, 5vyc:f2, 5vyc:f3, 5vyc:f4, 5vyc:f5, 5vyc:f6, 6w2s:g, 6w2t:g, 7wtt:f, 7wtu:f, 7wtv:f, 7wtw:f, 7wtz:f, 7wu0:f, 6xa1:Sf, 7xnx:Sf, 7xny:Sf, 8xsx:Sf, 8xsy:Sf, 8xsz:Sf, 8xxl:Sf, 8xxm:Sf, 8xxn:Sf, 6y0g:Sf, 6yal:f, 6yam:f, 6yan:f, 6ybs:k, 8yoo:Sf, 8yop:Sf, 6z6l:Sf, 6z6m:Sf, 6z6n:Sf, 7zjw:SD, 7zjx:SD, 6zlw:g, 6zm7:Sf, 6zme:Sf, 6zmi:Sf, 6zmo:Sf, 6zmt:g, 6zmw:k, 6zn5:g, 6zoj:f, 6zol:f, 6zon:U, 6zp4:U, 6zuo:f, 6zv6:f, 6zvh:f, 6zvj:U, 6zvk:Q3, 6zxd:f, 6zxe:f, 6zxf:f, 6zxg:f, 6zxh:f
9 4v6w:Af 80 76 0.4875 0.4875 0.5132 3.65e-18 6xu6:Af, 6xu7:Af, 6xu8:Af
10 8rxx:Sf 46 75 0.5750 1.0000 0.6133 2.66e-17
11 4v7e:Bf 71 53 0.3500 0.3944 0.5283 8.16e-15 8auv:N, 8b2l:N1, 8r57:f
12 4v88:Cf 76 52 0.3500 0.3684 0.5385 2.03e-14 4uer:9, 4v88:Af, 4v8y:A5, 4v8z:A5
13 9bh5:Af 50 52 0.3250 0.5200 0.5000 3.83e-14 9cai:Af
14 4v92:Bf 64 52 0.3375 0.4219 0.5192 2.77e-13
15 4bts:A9 93 61 0.3625 0.3118 0.4754 1.71e-12 4bts:B9, 4bts:C9, 4bts:D9
16 4v5o:A9 98 61 0.3625 0.2959 0.4754 2.24e-12 4v5o:B9
17 6woo:ff 44 33 0.2625 0.4773 0.6364 3.77e-12 8ccs:8, 8cdl:8, 8cdr:8, 8ceh:8, 8cf5:8, 8cg8:8, 8cgn:8, 8civ:8, 8cku:8, 8cmj:8, 7osm:eS31
18 7wtx:f 61 76 0.4250 0.5574 0.4474 8.25e-12 9bkd:k, 9bln:k
19 5ndg:e1 45 30 0.2500 0.4444 0.6667 6.76e-11
20 5xxu:f 45 51 0.3000 0.5333 0.4706 1.39e-08
21 6uz7:f 44 32 0.2125 0.3864 0.5312 1.51e-07
22 6tmf:Z 50 46 0.2750 0.4400 0.4783 1.93e-06
23 5jb3:Y 50 46 0.2875 0.4600 0.5000 2.59e-06 5jbh:Y, 6sw9:Y, 6swc:Y, 6swe:Y, 4v4n:BY, 4v6u:AY, 7zag:Y, 7zah:Y, 7zai:Y, 7zhg:Y
24 2k4x:A 55 24 0.1625 0.2364 0.5417 1.35e-04
25 7qvp:Rh 41 35 0.2000 0.3902 0.4571 0.001 6y57:sh
26 8p5d:SFF 58 52 0.1625 0.2241 0.2500 0.18 8p60:SFF, 8p60:RFF, 7qca:SFF
27 3a58:A 185 49 0.2000 0.0865 0.3265 0.52 3a58:C, 3a58:E
28 5caw:C 315 31 0.1500 0.0381 0.3871 1.3 5caw:A
29 1xc3:A 295 29 0.1500 0.0407 0.4138 1.4 3lm9:A, 3ohr:A
30 8i9w:CL 397 34 0.1500 0.0302 0.3529 6.9 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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