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BioLiP
>protein
GGGELFATHCAGCHPQGGNTVHPEKTLARARREANGIRTVRDVAAYIRNPGPGMPAFGEAMIPPADALKIGEYVVASFP

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3dp5:A 99 79 1.0000 0.7980 1.0000 1.41e-54 3cu4:A, 5mcs:A, 6u97:A
2 7y5e:GN 84 75 0.3418 0.3214 0.3600 4.06e-13 7y5e:G2, 7y7a:G7, 7y7a:Go
3 1gdv:A 85 76 0.3165 0.2941 0.3289 7.97e-12
4 4gyd:A 86 74 0.3038 0.2791 0.3243 8.75e-10 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
5 3ph2:B 85 56 0.2658 0.2471 0.3750 1.71e-09 2v08:A, 2v08:B
6 4eie:A 82 74 0.2911 0.2805 0.3108 2.01e-09 4eif:A
7 2zbo:A 86 75 0.2785 0.2558 0.2933 5.59e-09 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
8 4kmg:A 88 64 0.2658 0.2386 0.3281 4.83e-08
9 3dmi:A 87 78 0.3165 0.2874 0.3205 1.22e-07
10 2dge:A 102 62 0.2911 0.2255 0.3710 2.51e-07 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
11 1cyj:A 90 75 0.3165 0.2778 0.3333 4.51e-07 1cyi:A
12 1c6s:A 87 56 0.2405 0.2184 0.3393 2.86e-06 6tr1:A, 6tr1:C, 6tr1:E, 6tsy:A, 6tsy:B, 6tsy:C, 6tsy:D, 6tsy:E, 6tsy:F
13 3dr0:A 93 73 0.3291 0.2796 0.3562 2.84e-05 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
14 1a2s:A 89 58 0.2658 0.2360 0.3621 4.18e-05 1ced:A, 1ctj:A
15 1ls9:A 91 75 0.2911 0.2527 0.3067 4.25e-05
16 1c6o:A 89 58 0.2405 0.2135 0.3276 3.06e-04 1c6o:B, 1c6r:A
17 1kib:A 89 79 0.2911 0.2584 0.2911 0.001 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H
18 5lo9:A 471 82 0.2911 0.0488 0.2805 0.059 5lo9:B
19 4yuu:V1 129 54 0.2025 0.1240 0.2963 0.26 4yuu:v1, 4yuu:V2, 4yuu:v2
20 8k9e:A 218 69 0.2278 0.0826 0.2609 0.39 8k9f:A, 8x2j:A
21 7o38:A 81 62 0.2405 0.2346 0.3065 0.46
22 6f0k:E 182 88 0.3671 0.1593 0.3295 0.73
23 1fcd:C 174 20 0.1266 0.0575 0.5000 0.95 1fcd:D
24 3vrd:A 174 21 0.1266 0.0575 0.4762 1.3
25 8wql:VD 135 54 0.2152 0.1259 0.3148 1.9 1f1c:A, 1f1c:B, 8wql:VE, 8wql:V1, 8wql:v1, 8wql:vD, 8wql:vE
26 2xkk:C 711 28 0.1519 0.0169 0.4286 2.0 2xkk:A
27 3ihj:A 461 39 0.2152 0.0369 0.4359 2.2
28 3a0b:V 137 54 0.2278 0.1314 0.3333 2.8 3a0b:v, 3a0h:V, 3a0h:v, 2axt:V, 2axt:v, 5b5e:V, 5b5e:v, 5b66:V, 5b66:v, 7cji:V, 7cji:v, 7cjj:V, 7cjj:v, 7cou:V, 7cou:v, 7d1t:V, 7d1t:v, 7d1u:V, 7d1u:v, 6dhe:V, 6dhe:v, 6dhf:V, 6dhf:v, 6dhg:V, 6dhg:v, 6dhh:V, 6dhh:v, 6dho:V, 6dho:v, 6dhp:V, 6dhp:v, 5e79:V, 5e79:v, 5e7c:V, 5e7c:v, 7eda:V, 9evx:V, 9evx:v, 8ez5:V, 8ez5:v, 8f4c:V, 8f4c:v, 8f4d:V, 8f4d:v, 8f4e:V, 8f4e:v, 8f4f:V, 8f4f:v, 8f4g:V, 8f4g:v, 8f4h:V, 8f4h:v, 8f4i:V, 8f4i:v, 8f4j:V, 8f4j:v, 8f4k:V, 8f4k:v, 4fby:V, 4fby:i, 8gn0:V, 8gn0:v, 8gn1:V, 8gn1:v, 8gn2:V, 8gn2:v, 5gth:V, 5gth:v, 5gti:V, 5gti:v, 5h2f:V, 5h2f:v, 4il6:V, 4il6:v, 8ir5:V, 8ir5:v, 8ir6:V, 8ir6:v, 8ir7:V, 8ir7:v, 8ir8:V, 8ir8:v, 8ir9:V, 8ir9:v, 8ira:V, 8ira:v, 8irb:V, 8irb:v, 8irc:V, 8irc:v, 8ird:V, 8ird:v, 8ire:V, 8ire:v, 8irf:V, 8irf:v, 8irg:V, 8irg:v, 8irh:V, 8irh:v, 8iri:V, 8iri:v, 4ixq:V, 4ixq:v, 4ixr:V, 4ixr:v, 1izl:V, 1izl:0, 6jlj:V, 6jlj:v, 6jlk:V, 6jlk:v, 6jll:V, 6jll:v, 6jlm:V, 6jlm:v, 6jln:V, 6jln:v, 6jlo:V, 6jlo:v, 6jlp:V, 6jlp:v, 5kaf:V, 5kaf:v, 5kai:V, 5kai:v, 3kzi:V, 5mx2:V, 5mx2:v, 1mz4:A, 4pbu:V, 4pbu:v, 4pj0:V, 4pj0:v, 7rf1:V, 7rf1:v, 7rf2:V, 7rf2:v, 7rf3:V, 7rf3:v, 7rf4:V, 7rf4:v, 7rf5:V, 7rf5:v, 7rf6:V, 7rf6:v, 7rf7:V, 7rf7:v, 7rf8:V, 7rf8:v, 4rvy:V, 4rvy:v, 1s5l:V, 1s5l:v, 5tis:V, 5tis:v, 4tnh:V, 4tnh:v, 4tni:V, 4tni:v, 4tnj:V, 4tnj:v, 4tnk:V, 4tnk:v, 4ub6:V, 4ub6:v, 4ub8:V, 4ub8:v, 5v2c:V, 5v2c:v, 4v62:AV, 4v62:BV, 4v82:AV, 4v82:BV, 6w1o:V, 6w1o:v, 6w1p:V, 6w1p:v, 6w1q:V, 6w1q:v, 6w1r:V, 6w1r:v, 6w1t:V, 6w1t:v, 6w1u:V, 6w1u:v, 6w1v:V, 6w1v:v, 1w5c:T, 1w5c:V, 5ws5:V, 5ws5:v, 5ws6:V, 5ws6:v, 3wu2:V, 3wu2:v, 7yq2:V, 7yq2:v, 7yq7:V, 7yq7:v, 5zzn:V, 5zzn:v
29 8smr:G 312 61 0.2278 0.0577 0.2951 4.0
30 2c8s:A 149 13 0.1139 0.0604 0.6923 4.2
31 3ua3:A 662 21 0.1266 0.0151 0.4762 4.7 3ua3:B
32 7pol:B 336 35 0.1266 0.0298 0.2857 4.8 8wen:C, 8wen:A
33 2xts:D 204 45 0.1646 0.0637 0.2889 4.9 2xts:B
34 6btm:E 161 18 0.1139 0.0559 0.5000 5.8
35 2yev:B 319 79 0.3038 0.0752 0.3038 6.1 2yev:E
36 4izg:A 369 34 0.1646 0.0352 0.3824 6.2 4e8g:A, 4e8g:B, 4izg:B, 4j1o:A, 4j1o:B
37 7ajq:D 236 22 0.1519 0.0508 0.5455 6.6 7ajq:A, 7ajq:E, 7ajq:B, 7ajq:C
38 8h3x:C 357 35 0.1139 0.0252 0.2571 7.4 8h3y:A, 8h3y:B, 8h3y:C, 3p24:A, 3p24:B, 3p24:C, 3p24:D, 7pnd:A, 7pnd:B, 7pol:A, 7poo:A, 7poo:B, 7poq:A, 7poq:B, 7pou:A, 7pou:B, 8wem:C, 8wem:A, 8weo:B, 8weo:A
39 3afl:A 766 41 0.1772 0.0183 0.3415 7.4
40 7qhm:C 233 13 0.1013 0.0343 0.6154 7.5 7q21:C, 7q21:c, 7qhm:P, 7qho:C, 7qho:P
41 6hwh:i 162 13 0.1013 0.0494 0.6154 8.5 6hwh:j
42 7e1w:O 223 13 0.1013 0.0359 0.6154 8.8 7e1v:O, 7e1v:C, 7e1w:C, 7e1x:O, 7e1x:C, 8hcr:C, 8hcr:O
43 6adq:C 223 13 0.1013 0.0359 0.6154 8.8 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
44 3cp5:A 116 13 0.0886 0.0603 0.5385 9.0 6cuk:A, 6cun:A
45 5djq:C 303 79 0.2405 0.0627 0.2405 9.3 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
46 4o1w:A 79 71 0.2405 0.2405 0.2676 9.6 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
47 6v1x:A 446 9 0.1013 0.0179 0.8889 9.7 6v1x:B, 6v1x:C, 6v1x:D, 6v1y:A, 6v1y:B, 6v1y:C, 6v1y:D, 6v1y:M, 6v1y:N, 6v1y:O, 6v1y:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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