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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GGGASAPGVYVTPKNSVSSDIISIDWSPVQTAPYTYWAVHNWNQGGEAGGYAGFQQQSGFDENGKRTLHFAVWDPISSKE
AIKAEYVSPTSVASNFGGEGTGLKIQTTYDWKNYNWYRMTMRSWQENGHTKFGQWLKDVSKNQWKLIGIMDFPVPNVTFN
YGQTLFQADWLGNGQDVREARVKNGYGRNISDKKWTSWNTQSIEGQEPLNNNWDGGATSEYLWFKAGGDSRSTIGTGKTF
TLNQPSQPEIGKLDYDVKSTYYENEKLNITWQLKDSSTPQFKGKIEIYNNENMTGQPINVINDIKSYQNGISQSISLPTN
TYAKIVLTDIFDQTVEKKVKIKNE

The query sequence (length=344) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pn5:E 344 344 1.0000 1.0000 1.0000 0.0 8pn3:A, 8pn3:B, 8pn5:A, 8pn5:B, 8pn5:C, 8pn5:H, 8pn5:F, 8pn5:G, 8pn5:D
2 4au2:C 338 158 0.0959 0.0976 0.2089 0.014
3 3sae:A 780 33 0.0349 0.0154 0.3636 3.6 3sdr:A, 3sdt:A, 3sdu:A, 3sdv:A
4 3tc8:A 293 50 0.0552 0.0648 0.3800 6.6 3tc8:B
5 6ybb:F 280 59 0.0494 0.0607 0.2881 9.9 6tj0:A, 6tj0:B, 6ybb:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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