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BioLiP
>protein
GGEIVYLPNLNPDQLCAFIHSIHDDPSQSANLLAEAKKLNDAQA

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bxl:A 46 43 0.9091 0.8696 0.9302 1.12e-24 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
2 5h75:D 225 42 0.7500 0.1467 0.7857 1.50e-15 5h75:A, 5h75:B, 5h75:C, 1p3y:1
3 5coc:A 124 42 0.7273 0.2581 0.7619 1.74e-15
4 8cpl:C 499 42 0.7500 0.0661 0.7857 2.69e-15 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
5 5cbn:A 176 41 0.7273 0.1818 0.7805 4.62e-15
6 5h7d:E 113 42 0.7045 0.2743 0.7381 1.04e-14 5h7d:F, 5h7d:G, 5h7d:H, 5h7d:K, 5h7d:L, 5h7d:O, 5h7d:P
7 5ewx:B 214 42 0.6591 0.1355 0.6905 4.02e-13 5ewx:A
8 6fgo:F 67 53 0.6364 0.4179 0.5283 5.60e-10 6fgo:E, 6fgo:G, 6fgo:H
9 7rxc:B 439 43 0.5227 0.0524 0.5349 8.06e-09 7rxd:B
10 8jxr:C 341 43 0.5227 0.0674 0.5349 9.97e-09
11 6fxc:Ab 226 39 0.3182 0.0619 0.3590 1.0 7bge:b, 8bh6:b, 8bh7:b, 8byv:b, 6fxc:Bb, 7kwg:b, 5li0:b, 5nd8:b, 5nd9:b, 5ngm:Ab, 7nhl:c, 7nhm:c, 8p2f:c, 8p2g:c, 8p2h:c, 7p48:b, 6s0x:b, 6s13:b, 8y38:b, 8y39:b, 6yef:b
12 8psn:A 417 16 0.2045 0.0216 0.5625 2.1 8pso:A, 8psq:A, 8pss:A, 8psu:A, 8psx:A, 8psz:A, 8pt2:A, 8pt6:A, 8pt7:A, 8pth:A, 8ptj:A, 8qz8:A
13 6o8w:C 275 22 0.2045 0.0327 0.4091 2.2 7nhk:G, 6o8x:C, 6o8y:C, 6o8z:C, 6o90:C, 7p7q:G, 7p7r:G, 7p7s:G, 7p7t:G, 7p7u:G, 6w6p:C
14 7qep:M3 161 23 0.2727 0.0745 0.5217 2.3
15 2mkd:A 60 17 0.1364 0.1000 0.3529 4.7 2mkn:A
16 6d6j:B 113 34 0.3182 0.1239 0.4118 4.8 6d6j:A
17 6uxv:I 109 33 0.3182 0.1284 0.4242 5.1 6uxw:I
18 5li0:D 275 22 0.2273 0.0364 0.4545 6.1 7asm:C, 7asn:F, 7asp:C, 6ddd:B, 6ddg:B, 6fxc:AC, 6fxc:BC, 5hkv:A, 5hl7:A, 6hma:C, 5nd8:D, 5nd9:D, 5ngm:AC, 7nhl:G, 7nhm:G, 5nrg:A, 8p2f:G, 8p2g:G, 8p2h:G, 7p48:C, 6s0x:C, 6s0z:C, 6s12:C, 6s13:C, 6sj6:D, 5t7v:L2, 5tcu:L2, 7ttu:B, 7ttw:B, 4wce:A, 4wf9:A, 4wfa:A, 4wfb:A, 6wqn:B, 6wqq:B, 6wrs:B, 6wru:B, 8y36:C, 8y37:C, 8y38:C, 8y39:C, 6yef:D
19 8rch:A 2036 35 0.3409 0.0074 0.4286 6.6 8rch:B, 8rck:B, 8rcn:B
20 6zwm:B 2185 35 0.3409 0.0069 0.4286 6.7 6zwm:A
21 6bcu:A 2204 35 0.3409 0.0068 0.4286 7.0 6bcu:B, 6bcx:A, 6bcx:B, 4drh:B, 4drh:E, 4dri:B, 4drj:B, 8er6:B, 8er6:D, 8er6:F, 8er7:B, 8er7:D, 8er7:F, 8era:A, 9f44:A, 9f44:B, 9f45:A, 9f45:B, 1fap:B, 2fap:B, 3fap:B, 4fap:B, 5flc:B, 5flc:F, 5gpg:B, 4jsp:B, 4jsp:A, 4jsv:B, 4jsv:A, 4jsx:B, 4jsx:A, 4jt5:B, 4jt5:A, 4jt6:B, 4jt6:A, 6m4u:B, 6m4u:F, 6m4w:G, 6m4w:H, 6m4w:I, 1nsg:B, 7pe7:B, 7pe7:A, 7pe8:A, 7pe9:A, 7pea:B, 7pea:A, 7peb:A, 7pec:A, 8ppz:B, 7uxc:A, 7uxh:A, 7uxh:C, 5wbh:C, 5wbh:D, 5wbu:B, 5wbu:A, 6zwo:B
22 8e7f:A 614 20 0.2273 0.0163 0.5000 7.3
23 7zr1:A 529 27 0.2500 0.0208 0.4074 8.0 4yke:A, 4yke:B, 7zr1:B
24 3wwm:A 269 29 0.2955 0.0483 0.4483 9.7
25 4c1t:A 396 21 0.2273 0.0253 0.4762 9.8 4c1u:A, 3zkk:A, 3zkl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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