Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GGDLANEIARCTKLLNALNSGGDLANEIARCTKLLNALNSGGDLANEIARCTKLLNALNS

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5v2o:A 60 60 1.0000 1.0000 1.0000 4.21e-35 5v2o:B, 5v2o:C, 5v2o:D, 5v2o:E, 5v2o:F
2 1eqc:A 394 44 0.2333 0.0355 0.3182 6.2 4m81:A, 4m82:A, 3n9k:A, 2pb1:A, 2pc8:A
3 2bni:C 34 23 0.1833 0.3235 0.4783 9.0 2bni:D, 1u9h:A
4 2bni:C 34 23 0.1833 0.3235 0.4783 9.0 2bni:D, 1u9h:A
5 7zus:CCC 650 35 0.1833 0.0169 0.3143 9.2 8e23:A, 8e24:A, 8e24:D, 8gd7:A, 4x0p:A, 4x0p:B, 4x0p:C, 4x0p:D, 4x0q:A, 4x0q:B, 7zus:AAA, 7zus:BBB, 7zx0:AAA, 7zx0:BBB, 7zx0:CCC, 7zx0:DDD, 7zx0:EEE, 7zx0:FFF, 7zx1:AAA, 7zx1:BBB, 7zx1:CCC, 7zx1:DDD, 7zx1:EEE, 7zx1:FFF
6 3jb9:c 300 46 0.2500 0.0500 0.3261 9.8

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218