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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEH
IPDSPFVVPVASP

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4p3w:A 172 93 1.0000 0.5407 1.0000 3.61e-62 2brq:A, 2brq:B, 3isw:A, 3isw:B, 2jf1:A, 2mtp:A, 4p3w:B, 4p3w:E, 4p3w:F, 4p3w:D, 4p3w:C, 7sft:A, 2w0p:A, 2w0p:B
2 4p3w:A 172 69 0.2366 0.1279 0.3188 0.21 2brq:A, 2brq:B, 3isw:A, 3isw:B, 2jf1:A, 2mtp:A, 4p3w:B, 4p3w:E, 4p3w:F, 4p3w:D, 4p3w:C, 7sft:A, 2w0p:A, 2w0p:B
3 2k9u:A 119 92 0.9032 0.7059 0.9130 5.84e-57
4 2bp3:A 91 88 0.4839 0.4945 0.5114 3.51e-29 2bp3:B
5 4mgx:A 181 84 0.4194 0.2155 0.4643 1.34e-17
6 4mgx:A 181 88 0.3226 0.1657 0.3409 5.08e-06
7 6fq3:A 390 97 0.3441 0.0821 0.3299 8.93e-07 6fql:A
8 5xya:A 1358 55 0.1935 0.0133 0.3273 2.4 5xxz:A
9 7edd:A 1394 55 0.1935 0.0129 0.3273 2.4 5xyr:A
10 5xxz:B 1310 55 0.1935 0.0137 0.3273 2.6
11 2exh:A 533 32 0.1290 0.0225 0.3750 3.5 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D
12 7tz2:A 220 55 0.1720 0.0727 0.2909 4.8
13 7zvs:A 300 67 0.2043 0.0633 0.2836 5.4 7zvs:B
14 6sg9:FL 320 31 0.1398 0.0406 0.4194 5.5 6sgb:FL
15 2ror:A 138 38 0.1398 0.0942 0.3421 5.6 2lct:A, 2mc1:A
16 1xsc:A 153 53 0.2151 0.1307 0.3774 7.3 4ick:B, 4ijx:A, 4ijx:B
17 6jta:A 1298 46 0.1720 0.0123 0.3478 8.6 7dw7:A, 6jt7:A, 6jt8:A, 6jt9:A, 4l78:A, 4lgy:A, 6lyk:A, 6lyl:A, 6lym:A, 6lyo:A, 4mgh:A, 4r7g:A, 1t3t:A, 3ugj:A, 3ujn:A, 3umm:A
18 4hly:B 106 32 0.1398 0.1226 0.4062 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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