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BioLiP
>protein
GFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRIN

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8pp6:K 36 36 1.0000 1.0000 1.0000 2.69e-21
2 2d9g:A 53 34 0.8611 0.5849 0.9118 1.40e-18
3 7mnv:B 38 26 0.3611 0.3421 0.5000 6.06e-04
4 7mnt:B 38 23 0.3889 0.3684 0.6087 8.71e-04 7mnt:D, 7mnu:B
5 2ebq:A 47 33 0.3889 0.2979 0.4242 0.001 2gqe:A, 2k0c:A
6 7mo2:B 38 26 0.3333 0.3158 0.4615 0.002 3ch5:B, 7mo2:D
7 7mo5:B 36 26 0.3333 0.3333 0.4615 0.005
8 7mns:B 38 22 0.3333 0.3158 0.5455 0.017
9 7mnp:B 39 23 0.2778 0.2564 0.4348 0.024 7mnp:D, 7mnq:B
10 7mnr:B 40 23 0.2778 0.2500 0.4348 0.049
11 2ebr:A 47 24 0.2778 0.2128 0.4167 0.065
12 2ebv:A 57 26 0.3611 0.2281 0.5000 0.091
13 3a9j:C 32 24 0.2222 0.2500 0.3333 0.10 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
14 7mo3:B 38 26 0.3056 0.2895 0.4231 0.63 7mo3:D, 7mo4:B, 7mo4:D
15 1nj3:A 31 25 0.2222 0.2581 0.3200 0.82 1q5w:A
16 7lw7:A 277 26 0.2500 0.0325 0.3462 4.9 7lw8:A, 7lw9:A, 7lwa:A
17 4iqr:F 314 32 0.3056 0.0350 0.3438 5.1 8c1l:B, 3cbb:A, 3cbb:B, 6cht:A, 6cht:D, 6cht:G, 6cht:J, 3fs1:A, 4iqr:A, 4iqr:B, 4iqr:E, 1pzl:A
18 8f5o:B 1134 33 0.3889 0.0123 0.4242 8.4 8f5p:B
19 8im5:A 66 20 0.2222 0.1212 0.4000 9.5 3b0a:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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