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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GFSPLMDFFHSVEGRNYGELRSLTNETYQISENVRCTFLSIQSDPFAPGSQVRLVCPCTFSLEKVLQTTDLAAANPCRRV
AAEDFILRSFHAGYRNGIPRRTSGAVQVLRPSQHVLERSTVGLVKAHQAEIEIFARVKLPGHGRRIDGHGAIDIFYNELV
PLLEQCVVGLNEEDLHQHVICVHDQEVLRSNLLGAGYVAFVANGAILPRDAGNSDKPLRDNAVPFQSPKSLECSFTLPHS
GKTITGMGLPPGLTLIAGGGFHGKSTLLRALEVGIYNHVPDDGRTYVVVDPTAVKIRAEDRRSVHGVDISPFINNLPFGK
TTNFFVTADASGSTSQAANIMEALELGSQLLLLDEDTCATNLMYRDALMQMLVPRAQEPITPFVERVADLSQNHGVSSIM
VIGGSGQYFPQARVVLVMNAYQISDCTKEAKEIASNSSLPGDTASVFIPDVNRCFDPDGSFTTVRRGTKVSGIGTESIRF
SEETIDLSMVEQIVEEGQVNAIAQCLALLYDGEPRIVPEMTTKGGALTQLPSPGGVCEIQRGKFNSNFSSMIAGCCSHQH
DKRLELRTPSCYLPRGFTSATRHIEIGAALNRLRTLRTVT

The query sequence (length=600) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4yj1:A 600 600 1.0000 1.0000 1.0000 0.0 4yix:A, 4yiy:B, 4yiy:A
2 5d6a:A 548 597 0.3750 0.4106 0.3769 1.42e-105
3 6qkj:A 417 123 0.0600 0.0863 0.2927 0.57 6o6l:A, 6o6l:B, 6o6l:C, 6o6l:D, 6o6m:A, 6o6m:B, 6o6m:C, 6o6m:D, 8qf6:A, 8qf6:B, 8qf6:C, 8qf6:D, 6qki:A, 6qki:B, 6qki:C, 6qki:D, 6qkj:B
4 2iop:A 618 173 0.0517 0.0502 0.1792 1.1 2iop:B, 2iop:C, 2iop:D, 2ior:A, 1y4s:A, 1y4s:B
5 4pj3:A 1335 65 0.0333 0.0150 0.3077 1.2 7a5p:U, 6icz:Q, 6id1:Q, 7w59:Q, 7w5a:Q, 7w5b:Q, 5xjc:Q
6 7ktr:A 3042 76 0.0417 0.0082 0.3289 1.6
7 8xvg:L 3485 76 0.0417 0.0072 0.3289 2.0 8xvv:L
8 6hpf:A 312 123 0.0433 0.0833 0.2114 2.9
9 7mit:E 1438 150 0.0700 0.0292 0.2800 7.1 7mjo:E, 7mjp:E, 7mjq:E, 7y1l:A
10 1zfj:A 476 53 0.0250 0.0315 0.2830 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218