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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GFNIYTDESTLVSIGAGVYEHNGIIWVYTVDIITPVVNDPYLWGAISTANALSDVYAMGGIPVNALAISCFNNCIEIFRE
VIRGALDKLREAKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVGQLLILTKPIGTGILIKGLKEGILKEEDIN
EAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNF
VKNYLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNYWIIGETIAENVLEVL

The query sequence (length=304) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yye:B 343 309 1.0000 0.8863 0.9838 0.0 2yye:A, 2zau:A, 2zau:C
2 3u0o:B 335 285 0.3520 0.3194 0.3754 1.77e-52 3u0o:A
3 3fd5:B 355 297 0.2961 0.2535 0.3030 6.52e-30 3fd5:A, 3fd6:A, 3fd6:B
4 5cm7:A 305 269 0.2138 0.2131 0.2416 3.83e-08 5cc8:A, 5cc8:B, 5cm7:B, 5dd7:A, 5dd7:B, 6mfm:A, 6mfm:B
5 7du3:B 327 180 0.1678 0.1560 0.2833 2.68e-06 7du3:A, 8yku:A
6 8om2:P 120 81 0.0625 0.1583 0.2346 0.38 8d8j:P, 8d8k:P, 8d8l:P, 5mrc:PP, 5mre:PP, 5mrf:PP, 8om3:P, 8om4:P
7 3d2u:A 281 62 0.0658 0.0712 0.3226 1.3 3d2u:E
8 6yxx:E2 369 26 0.0362 0.0298 0.4231 2.6
9 7q4a:B 346 52 0.0493 0.0434 0.2885 4.5 7q4a:A
10 1kc7:A 872 173 0.1316 0.0459 0.2312 5.0
11 4s20:C 1179 39 0.0461 0.0119 0.3590 5.1 4s20:H
12 8txo:I 1024 39 0.0461 0.0137 0.3590 5.1
13 8sy7:I 1170 39 0.0461 0.0120 0.3590 5.1 8igr:I, 8sy5:I, 8sy6:I
14 3iyd:C 1089 39 0.0461 0.0129 0.3590 5.2
15 7yp9:C 1230 39 0.0461 0.0114 0.3590 5.2
16 6n9j:B 356 28 0.0362 0.0309 0.3929 5.3 6n9j:A
17 5ms0:C 1291 39 0.0461 0.0108 0.3590 5.3
18 7ypb:C 1292 39 0.0461 0.0108 0.3590 5.3 7ypa:C
19 6vyx:AA 1223 39 0.0461 0.0114 0.3590 5.4 6vyy:AA, 6vyz:AA, 6vz3:AA
20 8pen:I 1321 39 0.0461 0.0106 0.3590 5.4 8aby:C, 8abz:C, 8ac1:C, 8acp:C, 8ad1:C, 6alf:I, 6alg:I, 6alh:I, 6asx:I, 6bjs:I, 6c6t:I, 6c6u:I, 7d7c:C, 8eg7:I, 8eh8:I, 8eh9:I, 8eha:I, 8ehf:I, 8ehi:I, 8f3c:I, 8fix:C, 8fiy:C, 6flp:C, 8fvr:F, 8fvw:F, 8g00:I, 8g1s:I, 8g2w:I, 8g4w:I, 8g7e:I, 8g8z:I, 6jbq:C, 7mko:C, 8pbl:F, 8pfg:I, 8pfj:I, 8phk:I, 8pib:I, 8pid:I, 8pim:I, 6rh3:C, 6ri7:C, 6ri9:C, 6rin:C, 6rip:C, 8upo:AA, 8upr:AA, 8uql:AA, 8uqm:AA, 8uqp:AA, 8ur0:AA, 8urh:AA, 8uri:AA, 8urx:AA, 8ury:AA, 7uwe:I, 7uwh:I, 6x26:I, 6x2f:I, 6x2n:I, 6x43:I, 6x4w:I, 6x4y:I, 6x50:I, 6xav:I, 6xii:AA, 7xug:I, 6ztj:CC, 6ztl:CC, 6ztm:CC, 6ztn:CC, 6zto:CC, 6ztp:CC, 6zu1:CC
21 8pil:I 1342 39 0.0461 0.0104 0.3590 5.4 8ac0:C, 7adb:X, 7adc:X, 7add:X, 7ade:X, 6b6h:C, 7bef:C, 7beg:C, 6byu:C, 7c17:C, 6c6s:I, 7c97:C, 6ca0:C, 7chw:C, 6cux:C, 7d7d:C, 7dy6:C, 8e3f:A, 8e5k:A, 8e5o:A, 8e6x:A, 8e6z:A, 8eg8:I, 8egb:I, 6flq:C, 8ftd:I, 6gfw:C, 6gh5:C, 6gov:X, 5ipl:C, 5ipm:C, 5ipn:C, 6jnx:C, 8jo2:C, 6k4y:C, 8k58:C, 8k5a:C, 7khb:C, 7khc:C, 7khe:C, 7khi:C, 6kj6:C, 4kmu:C, 4kmu:H, 4kn4:C, 4kn4:H, 4kn7:C, 4kn7:H, 6ldi:C, 7m8e:C, 4mex:C, 4mex:I, 7mkd:I, 7mke:I, 7mki:I, 7mkj:I, 7mkn:C, 6n4c:C, 7n4e:C, 6n57:I, 6n58:I, 6n60:C, 6omf:C, 6oul:I, 6p18:C, 6p19:C, 6pb4:C, 6pb5:C, 6pb6:C, 8pdy:I, 8ph9:I, 6pmi:C, 6pmj:C, 6psq:I, 6psr:I, 6pst:I, 6psu:I, 6psv:I, 6psw:I, 7py0:C, 7py1:C, 7py3:C, 7py5:C, 7py6:C, 7py7:C, 7py8:C, 7pyj:C, 7pyk:C, 7q0j:C, 7q0k:C, 8re4:C, 8rea:C, 8reb:C, 8rec:C, 8red:C, 8ree:C, 7szj:C, 7szk:C, 8to1:I, 8to6:I, 8to8:I, 8toe:I, 8tom:I, 6tqn:X, 6tqo:X, 8u3b:C, 5uac:C, 5uah:C, 5ual:C, 7ubm:C, 7ubn:C, 6utv:CCC, 6utw:CCC, 6utx:CCC, 6uty:CCC, 6utz:CCC, 6uu0:CCC, 6uu1:CCC, 6uu2:CCC, 6uu3:CCC, 6uu4:CCC, 6uu5:CCC, 6uu6:CCC, 6uu7:CCC, 6uu8:CCC, 6uu9:CCC, 6uua:CCC, 6uub:CCC, 6uuc:CCC, 6vjs:C, 5vt0:I, 6vu3:AA, 7vwy:C, 7vwz:C, 6vyq:AA, 6vyr:AA, 6vys:AA, 6vyt:AA, 6vyu:AA, 6vyw:AA, 6vz2:AA, 6vz5:AA, 6vz7:AA, 6vzj:AA, 7w5w:C, 7w5x:C, 7w5y:C, 6wmu:C, 6x6t:AA, 6x7f:AA, 6x7k:AA, 6x9q:AA, 6xas:I, 6xdq:AA, 6xdr:AA, 6xgf:AA, 6xh7:C, 6xh8:C, 6xij:AA, 6xl5:C, 6xl9:C, 6xlj:C, 6xll:C, 6xlm:C, 6xln:C, 4xsx:C, 4xsx:I, 4xsy:C, 4xsy:I, 4xsz:C, 4xsz:I, 7xue:I, 7xui:I, 8y6u:C, 4yfn:I, 4yfx:C, 4yln:C, 4yln:I, 4yln:O, 4ylo:C, 4ylo:I, 4ylo:O, 4ylp:C, 4ylp:I, 4ylp:O, 6z9p:X, 6z9q:X, 6z9r:X, 6z9s:X, 6z9t:X, 4zh2:C, 4zh2:I, 4zh3:C, 4zh3:I, 4zh4:C, 4zh4:I
22 3vse:A 390 140 0.1118 0.0872 0.2429 5.6 3vse:B, 3vse:C, 3vse:D
23 4z63:A 610 136 0.1250 0.0623 0.2794 5.8 4z64:A
24 8cmo:1 194 26 0.0362 0.0567 0.4231 7.5 8cmo:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218