Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GFLTEVGEARQGTQQDEVIIAVGPAFGLAQTVNIVGIPHKSILREVIAGIEEEGIKARVIRCFKSSDVAFVAVEGNRLSG
SGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLLTLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHI
KETKYVVTGKNPQELRV

The query sequence (length=177) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yrt:B 182 177 1.0000 0.9725 1.0000 4.20e-128 3auj:B, 3auj:E, 1dio:B, 1dio:E, 1eex:B, 1eex:E, 1egm:B, 1egm:E, 1egv:B, 1egv:E, 1iwb:B, 1iwb:E, 1uc4:B, 1uc4:E, 1uc5:B, 1uc5:E, 7xrk:B, 7xrk:E, 7xrl:B, 7xrl:E, 5yrt:E, 5yrt:H, 5yrt:K, 5yrv:B, 5yrv:E, 5yrv:H, 5yrv:K, 5ysh:B, 5ysh:E, 5ysh:H, 5ysh:K
2 1iwp:B 184 173 0.6158 0.5924 0.6301 1.81e-77 1iwp:E, 1mmf:B, 1mmf:E
3 6dcf:D 1176 92 0.1808 0.0272 0.3478 0.083 6vvv:D
4 6z11:D 1254 92 0.1808 0.0255 0.3478 0.085 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
5 8ej3:D 1281 92 0.1808 0.0250 0.3478 0.089 6bzo:D, 6c04:D, 6c05:D, 6c06:D, 6dv9:D, 6dvb:D, 6dvc:D, 6dvd:D, 6dve:D, 8e74:D, 8e79:D, 8e82:D, 8e8m:D, 8e95:D, 6edt:D, 6ee8:D, 6eec:D, 8ehq:D, 8eoe:D, 8eof:D, 8eos:D, 8eot:D, 8exy:D, 6fbv:D, 8hih:D, 6jcx:D, 6jcy:D, 7kif:D, 7kim:D, 7kin:D, 6kon:D, 6koo:D, 6kop:D, 6koq:D, 6m7j:D, 7p5x:AD, 7pp4:d, 8q3i:D, 7q4u:D, 7q4u:J, 7q4u:P, 7q4u:W, 7q4u:CA, 7q4u:IA, 7q4u:OA, 7q4u:UA, 7q59:D, 7q59:d, 7rwi:D, 6tye:D, 6tyf:D, 6tyg:D, 7u22:D, 5uh5:D, 5uh6:D, 5uh8:D, 5uh9:D, 5uha:D, 5uhb:D, 5uhc:D, 5uhd:D, 5uhe:D, 5uhf:D, 5uhg:D, 6vvx:D, 6vvy:D, 6vvz:D, 6vw0:D, 6yxu:D, 6yys:D, 7z8q:d, 7zf2:D, 5zx2:D, 5zx3:D
6 6vvt:D 1200 92 0.1808 0.0267 0.3478 0.089
7 6cce:D 1195 92 0.1808 0.0268 0.3478 0.11
8 8xbe:A 298 31 0.0734 0.0436 0.4194 0.68 8iz4:R, 8k4n:D, 8sai:A, 8wrb:R, 8xbg:A, 8xbh:R, 8xbi:R
9 5awp:A 596 48 0.0847 0.0252 0.3125 0.93 5awq:A
10 2xrg:A 758 62 0.0960 0.0224 0.2742 2.4
11 5s9m:A 809 62 0.0960 0.0210 0.2742 2.4 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA
12 5fii:B 78 58 0.0960 0.2179 0.2931 2.8 5fii:A, 5fii:C, 5fii:D
13 5hog:B 432 29 0.0621 0.0255 0.3793 3.7 4c93:A, 4c93:B, 4c95:A, 4c95:B, 5hog:A, 5hoi:A, 5hoi:B, 5hoi:C, 5nxq:A, 5nxq:B
14 2z1q:B 549 35 0.0734 0.0237 0.3714 4.5 2z1q:A
15 3way:A 787 62 0.0960 0.0216 0.2742 5.2 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
16 4zg9:B 764 62 0.0904 0.0209 0.2581 5.7 5kxa:A, 5m7m:A, 4zg6:A, 4zg6:B, 4zg9:A, 4zga:A
17 5h3h:B 269 59 0.0960 0.0632 0.2881 7.1 5h3h:A
18 4jk1:D 1160 82 0.1469 0.0224 0.3171 8.5 4jk1:I, 4jk2:D, 4jk2:I, 4kmu:D, 4kmu:I, 4kn4:D, 4kn4:I, 4kn7:D, 4kn7:I, 4mex:D, 4mex:J, 4mey:D, 4mey:J, 4s20:D, 4zh3:D, 4zh4:D
19 8esl:A 309 36 0.0734 0.0421 0.3611 8.8 8esl:B, 8esl:C, 8esl:D
20 2raq:B 94 74 0.1130 0.2128 0.2703 9.8 2raq:A, 2raq:E, 2raq:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218