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BioLiP
>protein
GFKDYGHDYHPAPKTENIKGLGDLKPGIPKTPKQNGGGKRKRWTGDKGRKIAEWDSQHGELEGYRASDGQHLGSFDPKTG
NQLKGPDPKRNIKKYL

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v5k:AY 97 96 0.9792 0.9691 0.9792 8.18e-64 4udm:B
2 2qpz:A 103 37 0.1667 0.1553 0.4324 1.3
3 7jvi:A 421 31 0.1042 0.0238 0.3226 2.0 7jvi:B
4 7wae:B 877 38 0.1354 0.0148 0.3421 3.4 7wad:A, 7wad:B, 7wad:C, 7wad:D, 7wae:D, 7wae:A, 7wae:C, 7waf:A, 7waf:C, 7waf:D, 7waf:B
5 2h2n:A 317 38 0.1562 0.0473 0.3947 4.4 2h2n:B, 2h2u:A, 2h2u:B, 1s18:A, 1s18:B, 1s1d:A, 1s1d:B
6 6j0k:A 191 21 0.0938 0.0471 0.4286 4.7 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
7 7cpx:A 2262 16 0.0938 0.0040 0.5625 7.3 7cpx:B, 7cpy:A, 7cpy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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