Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GFGGFGMSVYTPKKDRRFRVQPLPSLHANSLADDTPLVTTTRTLSPNFRAFALQDGGVFFTHPSHEQVMRVGQNILAEET
KATGMTSMDTYVNSRIQSIIAENTVENVALSHWRRRHMWNLVRTHGKLQRHWGVSDATK

The query sequence (length=139) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yxx:Af 139 139 1.0000 1.0000 1.0000 1.92e-103 7aoi:Af, 6hiv:Af, 6hix:Af, 6yxy:Af
2 7aih:Aa 178 144 0.5971 0.4663 0.5764 6.96e-55 7am2:Aa, 7ane:Aa
3 6zca:Y 1127 130 0.2014 0.0248 0.2154 1.1 6zfb:Y, 6zfb:y
4 6wvk:D 1184 130 0.2014 0.0236 0.2154 1.2 6wvj:D
5 5ltx:A 243 49 0.1079 0.0617 0.3061 1.4 5ltx:B, 5t65:A, 5t65:B, 5t7m:A, 5t7m:B
6 5ovt:A 183 72 0.1367 0.1038 0.2639 2.1 5ovt:B, 5ovt:C, 5ovt:D, 5ovt:E, 5ovt:F, 5ovt:G
7 2whd:B 319 89 0.1871 0.0815 0.2921 2.6 2whd:A
8 2dq0:A 447 50 0.1223 0.0380 0.3400 2.9 2dq0:B, 2zr2:A, 2zr2:B
9 5lt9:B 253 51 0.1007 0.0553 0.2745 5.6 5lt9:A, 5lto:A, 5lto:B
10 4q86:B 583 53 0.1079 0.0257 0.2830 6.6 4q85:A, 4q85:B, 4q85:C, 4q85:D, 4q85:E, 4q85:G, 4q85:H, 4q86:A, 4q86:C, 4q86:D, 4q86:E, 4q86:G, 4q86:H
11 3dbj:A 160 82 0.1583 0.1375 0.2683 7.8 3dbj:C, 3dbj:E, 3dbj:G
12 6x32:B 3798 42 0.0935 0.0034 0.3095 8.9 6x32:E, 6x32:H, 6x32:K
13 2f7v:A 360 29 0.0719 0.0278 0.3448 9.3
14 2w16:B 754 69 0.1151 0.0212 0.2319 9.7 2iah:A, 2w6t:B, 2w6u:B, 2w76:B, 2w77:B, 2w78:B, 1xkh:A, 1xkh:B, 1xkh:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218