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BioLiP
>protein
GEYTEIALPFSYDGAGEYYWKTDQFSTDPNDWSRYVNSWNLDLLEINATDYTNVWVAQHQIPAASDGYWYIHYKSGVSWG
HVEIK

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5e9o:B 85 85 1.0000 1.0000 1.0000 2.03e-59 5e9o:C, 5e9o:D
2 5lu3:A 88 85 0.7647 0.7386 0.7647 2.49e-43
3 3bfk:B 179 34 0.1412 0.0670 0.3529 1.4 3bfk:A, 3bfk:C, 3bfk:D, 3bfk:E
4 8hpd:B 218 37 0.1647 0.0642 0.3784 2.3
5 8bd3:2 222 37 0.1529 0.0586 0.3514 2.5 8bd3:4, 8bd3:G, 8bd3:q, 8bd3:9, 8bd3:g
6 7d0j:S 233 37 0.1647 0.0601 0.3784 4.3 7d0j:P, 7d0j:Q, 7d0j:U, 7d0j:R, 7d0j:T, 7dz7:Y, 7dz7:U, 7dz8:Y, 7dz8:Z, 7dz8:U, 7e0h:Y, 7e0h:Z, 7e0i:U, 7e0j:Y, 7e0k:U, 6kac:N, 6kac:n, 6kad:2, 6kad:3, 6kad:5, 6kad:N, 6kad:9, 6kad:8, 6kad:p, 6kad:n, 6kaf:p, 6kaf:U, 6kaf:1, 6kaf:3, 6kaf:2, 6kaf:4, 6kaf:5, 6kaf:6, 6kaf:v, 6kaf:q, 6kaf:V, 6kaf:Q, 6kaf:P, 6kaf:N, 6kaf:G, 6kaf:u, 6kaf:g, 6kaf:n
7 8hpd:C 221 37 0.1647 0.0633 0.3784 4.9
8 7jzw:B 306 18 0.0941 0.0261 0.4444 5.0 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
9 4qc6:A 179 42 0.1412 0.0670 0.2857 7.4 4qc6:B
10 7pi0:Y 222 20 0.1059 0.0405 0.4500 7.5 7pi0:y, 7pi5:Y, 7pi5:y, 7pin:Y, 7pin:y, 7pin:Y1, 7pin:y1, 7piw:Y, 7piw:y, 7piw:Y1, 7piw:y1, 7pnk:Y
11 8bd3:1 214 20 0.1059 0.0421 0.4500 8.7 8bd3:7
12 7pi0:G 221 20 0.1059 0.0407 0.4500 9.0 7pi0:g, 7pi5:G, 7pi5:g, 7pin:G, 7pin:g, 7pin:G1, 7pin:g1, 7piw:G, 7piw:g, 7piw:G1, 7piw:g1, 7pnk:G
13 8bd3:6 217 20 0.1059 0.0415 0.4500 9.4 8bd3:0
14 8bd3:3 221 20 0.1059 0.0407 0.4500 9.7 8bd3:5, 8bd3:N, 8bd3:p, 8bd3:8, 8bd3:n

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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