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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GETKKMICLVDGEHYFPVVKDSIEILDDLEHIDVVAVVFIGGTEKLQIEDPKEYSEKLGKPVFFGPDPKKIPYDVIKKCV
KKYNADIVMDLSDEPVVDYTKRFRIASIVLKEGAVYQGADFKFEPLTEYDVLEKPSIKIIGTGKRIGKTAVSAYAARVIH
KHKYNPCVVAMGRGGPREPEIVEGNKIEITAEYLLEQADKGVHAASDHWEDALMSRILTVGCRRCGGGMLGDTFITNVKR
GAEIANKLDSDFVIMEGSGAAIPPVKTNRQIVTVGANQPMININNFFGPFRIGLADLVIITMCEEPMATTEKIKKVEKFI
KEINPSANVIPTVFRPKPVGNVEGKKVLFATTAPKVVVGKLVNYLESKYGCDVVGVTPHLSNRPLLRRDLKKYINKADLM
LTELKAAAVDVATRVAIEAGLDVVYCDNIPVVIDESYGNIDDAIIEVVEMAIDDFKNNR

The query sequence (length=459) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8oru:AAA 459 459 1.0000 1.0000 1.0000 0.0 8oru:BBB, 8oru:CCC, 8oru:DDD
2 6dfu:A 332 56 0.0392 0.0542 0.3214 0.17 6dfu:B
3 2hf8:A 211 84 0.0545 0.1185 0.2976 0.36 2hf8:B, 2hf9:A, 2hf9:B
4 8v87:q 371 37 0.0261 0.0323 0.3243 0.89 6elz:q, 6em5:q, 7nac:q, 7ohr:q, 7r7a:q, 7r7c:q, 8v83:q, 8v84:q
5 5ah5:A 789 86 0.0436 0.0253 0.2326 1.2 5ah5:B
6 8g7m:G 343 42 0.0349 0.0466 0.3810 2.0
7 5z9s:A 765 105 0.0458 0.0275 0.2000 2.5 5z9s:B
8 6jtk:B 346 56 0.0436 0.0578 0.3571 4.5 6jtk:A, 6jtk:C, 6jtk:F, 6jtk:D, 6jtk:E
9 7k3u:A 362 54 0.0370 0.0470 0.3148 4.6 7k3u:B, 7k3u:C, 7k3u:D, 7k3u:E, 7k3u:F, 7k3u:G, 7k3u:H, 7k3u:I, 7k3u:J, 7n02:A, 7n02:B, 6xmr:A, 6xmr:B, 4zng:C, 4zng:B, 4zng:A
10 6gzd:A 297 62 0.0414 0.0640 0.3065 4.9 5fqd:C, 5fqd:F, 8g66:C
11 2o7r:A 307 47 0.0349 0.0521 0.3404 5.6
12 5a9z:AF 208 65 0.0436 0.0962 0.3077 6.4 5aa0:AF, 7azo:L4A, 7azo:L4B, 7azs:L4A, 7azs:L4B, 9b00:1F, 9b00:2F, 6b4v:G, 6b4v:KB, 6boh:G, 6boh:LB, 6bok:G, 6bok:JB, 6buw:RF, 6buw:YF, 6bz6:RF, 6bz6:YF, 6bz7:RF, 6bz7:YF, 6bz8:RF, 6bz8:YF, 6c5l:BF, 6c5l:DF, 6cae:1F, 6cae:2F, 6cfj:1F, 6cfj:2F, 6cfk:1F, 6cfk:2F, 6cfl:1F, 6cfl:2F, 8cvj:1F, 8cvj:2F, 8cvk:1F, 8cvk:2F, 8cvl:1F, 8cvl:2F, 5czp:YF, 5czp:RF, 6czr:1F, 6czr:2F, 5d8b:C, 5d8b:YA, 5dfe:YF, 5dfe:RF, 5dox:1F, 5dox:2F, 5doy:1F, 5doy:2F, 5e7k:31, 5e7k:39, 5e81:31, 5e81:39, 8ekb:1F, 8ekb:2F, 5el4:31, 5el4:39, 5el5:31, 5el5:39, 5el6:31, 5el6:39, 5el7:31, 5el7:39, 8ev6:1F, 8ev6:2F, 8ev7:1F, 8ev7:2F, 5f8k:1F, 5f8k:2F, 8fc1:1F, 8fc1:2F, 8fc2:1F, 8fc2:2F, 8fc3:1F, 8fc3:2F, 8fc4:1F, 8fc4:2F, 8fc5:1F, 8fc5:2F, 8fc6:1F, 8fc6:2F, 5fdu:1F, 5fdu:2F, 5fdv:1F, 5fdv:2F, 6fkr:1F, 6fkr:2F, 8fom:RF, 8fom:YF, 8fon:RF, 8fon:YF, 8g29:1F, 8g29:2F, 8g2a:1F, 8g2a:2F, 8g2b:1F, 8g2b:2F, 8g2c:1F, 8g2c:2F, 8g2d:1F, 8g2d:2F, 6gsj:31, 6gsj:39, 6gsk:31, 6gsk:39, 6gsl:31, 6gsl:39, 6gzq:E1, 6gzx:E1, 6gzx:E2, 6gzz:E1, 6gzz:E2, 5hau:1F, 5hau:2F, 5hcp:1F, 5hcp:2F, 5hcq:1F, 5hcq:2F, 5hcr:1F, 5hcr:2F, 5hd1:1F, 5hd1:2F, 5ib7:31, 5ib7:39, 5ib8:31, 5ib8:39, 5ibb:31, 5ibb:39, 5imq:c, 5imr:c, 5j30:RF, 5j30:YF, 5j3c:RF, 5j3c:YF, 5j4b:1F, 5j4b:2F, 5j4c:1F, 5j4c:2F, 5j4d:G, 5j4d:LB, 5j8b:F, 7jql:1F, 7jql:2F, 7jqm:1F, 7jqm:2F, 4l47:RF, 4l47:YF, 4l71:RF, 4l71:YF, 4lel:RF, 4lel:YF, 4lfz:RF, 4lfz:YF, 7lh5:BF, 7lh5:DF, 4lnt:RF, 4lnt:YF, 4lsk:RF, 4lsk:YF, 4lt8:RF, 4lt8:YF, 7md7:1F, 7md7:2F, 6n1d:AL04, 6n1d:BL04, 6n9e:1F, 6n9e:2F, 6n9f:1F, 6n9f:2F, 5ndj:31, 5ndj:39, 5ndk:31, 5ndk:39, 6nd5:1F, 6nd5:2F, 6nd6:1F, 6nd6:2F, 6ndk:RF, 6ndk:YF, 6nsh:RF, 6nsh:YF, 6nta:RF, 6nta:YF, 6nuo:RF, 6nuo:YF, 6nwy:RF, 6nwy:YF, 6o3m:RF, 6o3m:YF, 6o97:1F, 6o97:2F, 6of1:1F, 6of1:2F, 6of6:RF, 6of6:YF, 6oj2:RF, 6oj2:YF, 6ope:RF, 6ope:YF, 6ord:RF, 6ord:YF, 6osi:RF, 6osi:YF, 5ot7:i, 6otr:RF, 6otr:YF, 6oxa:RF, 6oxa:YF, 6oxi:RF, 6oxi:YF, 4p6f:RF, 4p6f:YF, 4p70:RF, 4p70:YF, 6q95:D, 6qnq:31, 6qnq:39, 6qnr:31, 6qnr:39, 7rq8:1F, 7rq8:2F, 7rq9:1F, 7rq9:2F, 7rqa:1F, 7rqa:2F, 7rqb:1F, 7rqb:2F, 7rqc:1F, 7rqc:2F, 7rqd:1F, 7rqd:2F, 7rqe:1F, 7rqe:2F, 8t8b:1F, 8t8b:2F, 8t8c:1F, 8t8c:2F, 4tua:RF, 4tua:YF, 4tub:RF, 4tub:YF, 4tuc:RF, 4tuc:YF, 4tud:RF, 4tud:YF, 4tue:RF, 4tue:YF, 7u2h:1F, 7u2h:2F, 7u2i:1F, 7u2i:2F, 7u2j:1F, 7u2j:2F, 6ucq:1F, 6ucq:2F, 8ud6:1F, 8ud6:2F, 8ud7:1F, 8ud7:2F, 8ud8:1F, 8ud8:2F, 6uo1:1F, 6uo1:2F, 5uq7:F, 5uq8:F, 8uvr:1F, 8uvr:2F, 8uvs:1F, 8uvs:2F, 4v4i:D, 4v4j:D, 4v4x:BF, 4v4y:BF, 4v4z:BF, 4v51:BF, 4v51:DF, 4v5a:BF, 4v5a:DF, 4v5c:BF, 4v5c:DF, 4v5d:BF, 4v5d:DF, 4v5e:BF, 4v5e:DF, 4v5f:BF, 4v5f:DF, 4v5g:BF, 4v5g:DF, 4v5j:BF, 4v5j:DF, 4v5k:BF, 4v5k:DF, 4v5l:BF, 4v5m:BF, 4v5n:BF, 4v5p:BF, 4v5p:DF, 4v5q:BF, 4v5q:DF, 4v5r:BF, 4v5r:DF, 4v5s:BF, 4v5s:DF, 4v63:BF, 4v63:DF, 4v67:BF, 4v67:DF, 4v68:BF, 4v6a:BF, 4v6a:DF, 4v6f:AF, 4v6f:DF, 4v6g:BF, 4v6g:DF, 4v7j:AF, 4v7j:BF, 4v7k:AF, 4v7k:BF, 4v7l:BF, 4v7l:DF, 4v7m:BF, 4v7m:DF, 4v7p:BE, 4v7p:CE, 4v7w:BF, 4v7w:DF, 4v7x:BF, 4v7x:DF, 4v7y:BF, 4v7y:DF, 4v7z:BF, 4v7z:DF, 4v83:BE, 4v83:DE, 4v84:BE, 4v84:DE, 4v87:AF, 4v87:DF, 4v8a:AF, 4v8a:BF, 4v8b:BF, 4v8b:DF, 4v8c:AF, 4v8c:BF, 4v8d:BF, 4v8d:DF, 4v8e:AF, 4v8e:CF, 4v8f:AF, 4v8f:DF, 4v8g:BF, 4v8g:DF, 4v8h:BF, 4v8h:DF, 4v8i:BF, 4v8i:DF, 4v8j:BF, 4v8j:DF, 4v8n:BF, 4v8n:DF, 4v8o:BF, 4v8q:AF, 4v8u:BF, 4v8u:DF, 4v8x:BF, 4v8x:DF, 5v8i:1F, 5v8i:2F, 4v90:BF, 4v95:BF, 4v95:DF, 4v97:BF, 4v97:DF, 4v9a:BF, 4v9a:DF, 4v9b:BF, 4v9b:DF, 4v9h:BF, 4v9i:BF, 4v9i:DF, 4v9j:BF, 4v9j:DF, 4v9k:BF, 4v9k:DF, 4v9l:BF, 4v9l:DF, 4v9m:BF, 4v9m:DF, 4v9n:BF, 4v9n:DF, 4v9q:AF, 4v9q:CF, 4v9r:BF, 4v9r:DF, 4v9s:BF, 4v9s:DF, 5vp2:1F, 5vp2:2F, 5vpo:RF, 5vpo:YF, 5vpp:RF, 5vpp:YF, 8vtu:1F, 8vtu:2F, 8vtv:1F, 8vtv:2F, 8vtw:1F, 8vtw:2F, 8vtx:1F, 8vtx:2F, 8vty:1F, 8vty:2F, 1vvj:RF, 1vvj:YF, 1vy4:BF, 1vy4:DF, 1vy5:BF, 1vy5:DF, 1vy6:BF, 1vy6:DF, 1vy7:BF, 1vy7:DF, 4w29:BF, 4w29:DF, 4w2e:F, 4w2f:BF, 4w2f:DF, 4w2g:BF, 4w2g:DF, 4w2h:BF, 4w2h:DF, 4w2i:BF, 4w2i:DF, 4w4g:RF, 4w4g:YF, 5w4k:1F, 5w4k:2F, 5wis:1F, 5wis:2F, 5wit:1F, 5wit:2F, 4wpo:AF, 4wpo:CF, 4wq1:31, 4wq1:39, 4wqf:AF, 4wqf:CF, 4wqr:31, 4wqr:39, 4wqu:AF, 4wqu:CF, 4wqy:AF, 4wqy:CF, 4wr6:31, 4wr6:39, 4wra:31, 4wra:39, 4wro:31, 4wsd:31, 4wsd:39, 4wsm:31, 4wsm:39, 4wt1:31, 4wt1:39, 4wt8:CD, 4wt8:DD, 4wu1:31, 4wu1:39, 4wzd:31, 4wzd:39, 4wzo:31, 4wzo:39, 4xej:AL04, 4xej:BL04, 6xhv:1F, 6xhv:2F, 6xhw:1F, 6xhw:2F, 6xhx:1F, 6xhx:2F, 6xhy:1F, 6xhy:2F, 6xqd:1F, 6xqd:2F, 6xqe:1F, 6xqe:2F, 4y4o:1F, 4y4o:2F, 4y4p:1F, 4y4p:2F, 4ypb:RF, 4ypb:YF, 4yzv:RF, 4yzv:YF, 4z3s:1F, 4z3s:2F, 4z8c:1F, 4z8c:2F, 4zer:1F, 4zer:2F, 5zlu:b, 4zsn:RF, 4zsn:YF
13 6hac:A 342 64 0.0458 0.0614 0.3281 7.4 6hae:A, 6hae:K, 6hav:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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