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BioLiP
>protein
GERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eq0:A 55 55 1.0000 1.0000 1.0000 2.58e-34 3i91:A
2 3gv6:A 56 54 0.8000 0.7857 0.8148 1.30e-28 3i90:A, 3i90:B
3 5epl:B 58 55 0.7273 0.6897 0.7273 3.45e-25 5epl:A
4 5ejw:A 80 55 0.6909 0.4750 0.6909 5.10e-25 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
5 5epk:A 54 54 0.6545 0.6667 0.6667 5.63e-24 3h91:A, 3h91:B
6 1pfb:A 55 50 0.5273 0.5273 0.5800 5.32e-19 1pdq:A
7 2rvn:A 83 47 0.4000 0.2651 0.4681 2.97e-12
8 6asz:A 53 48 0.4000 0.4151 0.4583 6.96e-12 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 3tzd:A 58 47 0.4000 0.3793 0.4681 7.88e-12 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
10 1guw:A 73 41 0.4182 0.3151 0.5610 1.14e-11 6d07:A, 6d07:B, 6d08:A, 6d08:B
11 8uxq:A 170 45 0.4000 0.1294 0.4889 2.56e-11 3fdt:A
12 7vyw:A 47 38 0.3273 0.3830 0.4737 2.72e-10
13 7n27:A 57 46 0.3455 0.3333 0.4130 3.27e-09 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
14 6v41:AAA 61 53 0.3455 0.3115 0.3585 8.88e-09
15 3qo2:A 61 46 0.3273 0.2951 0.3913 7.59e-08 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
16 4u68:A 64 49 0.3455 0.2969 0.3878 9.24e-08 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
17 6v2d:G 64 34 0.2909 0.2500 0.4706 6.33e-07 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
18 7vrf:A 61 51 0.3636 0.3279 0.3922 1.23e-06 7vrf:B
19 2rsn:A 75 43 0.3273 0.2400 0.4186 8.75e-06 3g7l:A
20 6s47:Bi 952 53 0.3273 0.0189 0.3396 1.43e-05
21 2b2w:A 177 25 0.2545 0.0791 0.5600 1.10e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
22 5e4w:C 105 52 0.3091 0.1619 0.3269 4.42e-04 5e4w:D, 5e4x:A
23 4fsx:A 680 29 0.1818 0.0147 0.3448 0.084 4fsx:B, 4ft2:B, 4ft2:A
24 7ubu:A 708 29 0.1818 0.0141 0.3448 0.095 4ft4:A, 4ft4:B
25 3oa6:A 84 29 0.2000 0.1310 0.3793 0.32 3oa6:B
26 6ryr:W 708 25 0.1636 0.0127 0.3600 0.46 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
27 6q3m:C 219 25 0.1636 0.0411 0.3600 0.50 6q3m:A, 6q3m:B
28 7tn2:W 895 32 0.2364 0.0145 0.4062 0.83 9gd2:W, 9gd3:W
29 7tn2:W 895 40 0.2364 0.0145 0.3250 4.6 9gd2:W, 9gd3:W
30 6g0l:M 855 32 0.2364 0.0152 0.4062 0.87 7nkx:W, 5o9g:W
31 6g0l:M 855 40 0.2364 0.0152 0.3250 4.5 7nkx:W, 5o9g:W
32 9gd1:W 849 32 0.2364 0.0153 0.4062 0.88
33 9gd1:W 849 40 0.2364 0.0153 0.3250 4.6
34 6ftx:W 878 32 0.2364 0.0148 0.4062 0.88 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
35 6ftx:W 878 40 0.2364 0.0148 0.3250 4.5 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
36 6guu:B 204 25 0.1818 0.0490 0.4000 1.1 6guu:A
37 6sd8:X 503 26 0.1818 0.0199 0.3846 3.0 6sd8:A, 6sda:A, 6sda:B
38 4pl6:A 57 43 0.2182 0.2105 0.2791 4.1 4pl6:B, 4pli:A, 4pli:B, 4pll:A, 4pll:B
39 3j7a:E 185 18 0.1636 0.0486 0.5000 5.4 3jbn:E, 3jbo:E, 3jbp:E, 6okk:E, 8tpu:SE
40 4k0x:A 243 43 0.2182 0.0494 0.2791 7.0 4jf4:A, 4jf4:B, 4k0w:A, 6n6u:A, 6n6v:A, 6n6x:A, 6n6y:A, 7t7d:A, 7t7e:A, 7t7f:A, 7t7g:A, 5wi3:B, 5wi3:A, 5wi7:A, 5wi7:B, 5wib:A, 5wib:B, 4x55:A, 4x55:B
41 5wyr:B 248 38 0.2000 0.0444 0.2895 7.9 6afk:A, 6afk:B, 6jki:A, 6jki:B, 6joe:A, 6joe:B, 5wyq:A, 5wyq:B, 5wyr:A, 5zhm:A, 5zhm:B, 5zhn:A, 5zhn:B
42 6v85:A 1901 24 0.2000 0.0058 0.4583 9.4 6v86:A
43 8snl:A 656 27 0.1636 0.0137 0.3333 9.5 2a8h:A, 2a8h:B, 3b92:A, 1bkc:A, 1bkc:C, 1bkc:E, 1bkc:I, 3cki:A, 2ddf:A, 2ddf:B, 3e8r:A, 3e8r:B, 3edz:A, 3edz:B, 3ewj:A, 3ewj:B, 2fv5:A, 2fv5:B, 2fv9:A, 2fv9:B, 3g42:A, 3g42:B, 3g42:C, 3g42:D, 2i47:A, 2i47:B, 2i47:C, 2i47:D, 3kmc:A, 3kmc:B, 3kme:A, 3kme:B, 3l0t:A, 3l0t:B, 3l0v:A, 3l0v:B, 3le9:A, 3le9:B, 3lea:A, 3lea:B, 3lgp:A, 3lgp:B, 3o64:A, 3o64:B, 2oi0:A, 8snm:B, 8snn:A, 8sno:A, 1zxc:A, 1zxc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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