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BioLiP
>protein
GERRRSQLDRDQCAYCKEKGHWAKDCPKKPRGPRGPRPQT

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2mqv:A 56 40 1.0000 0.7143 1.0000 2.42e-24 1a6b:B, 2ms0:A, 2ms0:C, 2ms1:A, 1u6p:A, 1wwd:A, 1wwe:A, 1wwf:A, 1wwg:A
2 8opp:A 670 21 0.2500 0.0149 0.4762 0.025
3 8opt:A 783 26 0.2750 0.0140 0.4231 0.036 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
4 7c4c:A 332 20 0.2250 0.0271 0.4500 0.47 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
5 7b9v:c 37 19 0.2750 0.2973 0.5789 0.65
6 5w0n:A 379 17 0.2000 0.0211 0.4706 1.1 5w0m:A, 5w0m:C, 5w0n:B
7 5w0b:A 334 15 0.2000 0.0240 0.5333 1.3
8 1p9b:A 424 26 0.2500 0.0236 0.3846 1.4
9 6bk8:O 229 19 0.2750 0.0480 0.5789 1.8
10 6exn:c 204 19 0.2750 0.0539 0.5789 1.9
11 2ihx:A 50 28 0.2750 0.2200 0.3929 2.3
12 5yzg:y 112 27 0.2500 0.0893 0.3704 3.5 8i0w:z
13 8sk0:B 330 27 0.2250 0.0273 0.3333 3.9 8shh:A, 8shh:B, 8sk0:A
14 7sj3:A 274 21 0.2750 0.0401 0.5238 5.4 5fwk:K, 6p8e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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