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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GENVLICLCGSVNSINISHYIIELKSKFDEVNVIASTNGRKFINGEILKQFCDNYYDEFEDPFLNHVDIANKHDKIIILP
ATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANISESYELASKTFKKNVV
APEPYKVLEFI

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qjg:A 171 171 1.0000 1.0000 1.0000 9.35e-125 3qjg:C, 3qjg:B, 3qjg:D, 3qjg:E, 3qjg:F, 3qjg:G, 3qjg:I, 3qjg:H, 3qjg:J, 3qjg:L, 3qjg:K
2 1g5q:A 174 168 0.5263 0.5172 0.5357 1.42e-64 1g5q:D, 1g5q:G, 1g5q:L, 1g63:A, 1g63:B, 1g63:H, 1g63:C, 1g63:J, 1g63:D, 1g63:F, 1g63:E, 1g63:G, 1g63:I, 1g63:L, 1g63:K
3 5h75:D 225 168 0.3450 0.2622 0.3512 1.86e-19 5h75:A, 5h75:B, 5h75:C, 1p3y:1
4 1e20:A 185 152 0.2865 0.2649 0.3224 5.98e-17 1mvl:A, 1mvn:A
5 1qzu:A 160 143 0.2632 0.2812 0.3147 9.22e-17 1qzu:B, 1qzu:C, 1qzu:D
6 7cfu:F 175 143 0.2105 0.2057 0.2517 1.64e-14 7cfu:H, 7cfu:S, 7cfu:T, 7cfu:P, 7cfu:A, 7cfu:B, 7cfu:C, 7cfu:D, 7cfu:E, 7cfu:G, 7cfu:I, 7cfu:J, 7cfu:K, 7cfu:L, 7cfu:M, 7cfu:N, 7cfu:O, 7cfu:Q, 7cfu:R, 7cfu:U, 7cfu:V, 7cfu:W, 7cfu:X
7 6tgv:C 389 146 0.1988 0.0874 0.2329 8.26e-11 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
8 6jls:A 162 136 0.2456 0.2593 0.3088 9.44e-11
9 6m8v:A 183 146 0.2281 0.2131 0.2671 1.14e-10
10 6m8t:A 189 156 0.2339 0.2116 0.2564 3.45e-06 6m8u:A
11 6eoa:A 193 154 0.1988 0.1762 0.2208 1.40e-05
12 4m7u:A 170 56 0.0877 0.0882 0.2679 0.033 4m7v:A
13 3wis:A 180 25 0.0760 0.0722 0.5200 0.36
14 3aiq:A 491 68 0.1170 0.0407 0.2941 0.39 3air:A, 3ais:A, 3aiv:A, 3aiw:A
15 7km3:F 190 96 0.1404 0.1263 0.2500 0.58 7km2:L, 7km2:D, 7km2:I, 7km2:A, 7km2:B, 7km2:K, 7km2:C, 7km2:E, 7km2:J, 7km2:F, 7km2:G, 7km2:H, 7km3:L, 7km3:D, 7km3:I, 7km3:A, 7km3:B, 7km3:G, 7km3:K, 7km3:C, 7km3:E, 7km3:H, 7km3:J
16 6qlg:A 188 73 0.1170 0.1064 0.2740 0.63 6qlg:C, 6qlg:B, 6qlg:E, 6qlg:D, 6qlg:F
17 3e0b:A 166 28 0.0643 0.0663 0.3929 1.2 3dat:A, 3e0b:B, 4elb:A, 4elb:H, 4elb:C, 4elb:B, 4elb:G, 4elb:F, 4elb:D, 4elb:E, 4ele:A, 4ele:B, 4ele:C, 4ele:D, 4ele:E, 4ele:F, 4ele:G, 4ele:H, 4elf:A, 4elf:B, 4elf:C, 4elf:D, 4elf:E, 4elf:F, 4elf:G, 4elf:H, 4elg:A, 4elg:B, 4elg:C, 4elg:D, 4elg:E, 4elg:F, 4elg:G, 4elg:H, 4elh:A, 4elh:H, 4elh:C, 4elh:B, 4elh:G, 4elh:F, 4elh:D, 4elh:E, 3fl8:A, 3fl8:B, 3fl8:C, 3fl8:D, 3fl8:E, 3fl8:F, 3fl8:G, 3fl8:H, 3fl9:A, 3fl9:B, 3fl9:C, 3fl9:D, 3fl9:E, 3fl9:F, 3fl9:G, 3fl9:H, 3jvx:A, 3jvx:B, 3jw3:A, 3jw3:B, 3jw5:A, 3jw5:B, 3jwc:A, 3jwc:B, 3jwf:A, 3jwf:B, 3jwk:A, 3jwk:B, 3jwm:A, 3jwm:B, 2kgk:A, 2qk8:A, 3s9u:A, 3s9u:B, 3sa1:A, 3sa1:B, 3sa2:A, 3sa2:B, 3sai:A, 3sai:B
18 7sn6:B 105 32 0.0643 0.1048 0.3438 1.5 1o0p:A, 1opi:A, 7sn6:A
19 2i9p:B 296 51 0.0994 0.0574 0.3333 1.9 2i9p:A, 2i9p:C, 2i9p:D
20 8ssn:B 386 37 0.0877 0.0389 0.4054 2.2
21 1dwo:A 262 143 0.2047 0.1336 0.2448 2.9 1dwq:A, 1e8d:A, 1e8d:B, 1eb9:A, 1eb9:B
22 6qlh:A 208 75 0.1111 0.0913 0.2533 3.6 6qli:A, 6qlj:A, 6qlk:A, 6qll:A, 6qlv:A, 6qlv:B, 6qlv:C, 6qlv:D, 6qlv:H, 6qlv:E, 6qlv:F, 6qlv:K, 6qlv:G, 6qlv:I, 6qlv:J, 6qlv:L, 4zaf:A, 4zag:A, 4zal:A, 4zan:A, 4zav:A, 4zaw:A, 4zax:A, 4zay:A, 4zaz:A, 3zqu:A
23 7c86:A 296 30 0.0819 0.0473 0.4667 7.8 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
24 2rpz:A 192 46 0.0877 0.0781 0.3261 8.7
25 3k2h:A 503 43 0.0760 0.0258 0.3023 9.4 3k2h:B, 3kjr:A, 3kjr:B, 3nrr:A, 3nrr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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