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BioLiP
>protein
GELKAIAQELKAIAKELKAIAYECKAIAQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6q5j:D 30 30 0.9333 0.9333 0.9333 3.96e-11 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
2 4kvu:B 30 30 0.9333 0.9333 0.9333 9.54e-11 4kvv:H, 4kvv:L
3 4h8m:A 30 30 0.8667 0.8667 0.8667 7.52e-10
4 4h8g:F 30 30 0.7000 0.7000 0.7000 9.73e-09 4h8g:H
5 3r4a:B 30 30 0.6667 0.6667 0.6667 7.84e-05 3r4a:C, 3r4h:B, 3r4h:C
6 4dzl:F 32 30 0.5667 0.5312 0.5667 0.001 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
7 5ez8:E 30 24 0.5667 0.5667 0.7083 0.003 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
8 8qac:C 30 30 0.6000 0.6000 0.6000 0.003
9 7a1t:C 30 25 0.5667 0.5667 0.6800 0.005 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
10 8b45:B 30 30 0.4333 0.4333 0.4333 0.006 8b45:C, 8b45:D
11 8qab:A 30 30 0.6000 0.6000 0.6000 0.008 8qab:D
12 4pnb:D 30 24 0.4667 0.4667 0.5833 0.043
13 7bat:B 30 25 0.5000 0.5000 0.6000 0.043 7baw:D, 7baw:F
14 6i1j:A 30 30 0.5333 0.5333 0.5333 0.047
15 7bau:D 30 24 0.4667 0.4667 0.5833 0.060 7bau:J, 7bau:E, 7bau:G, 7bau:I
16 8b16:A 30 24 0.5000 0.5000 0.6250 0.13 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
17 6g6a:B 30 24 0.4000 0.4000 0.5000 1.5 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
18 6g68:H 30 24 0.3333 0.3333 0.4167 1.7 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
19 1g4u:S 360 29 0.3667 0.0306 0.3793 5.4
20 8dtp:B 432 27 0.3000 0.0208 0.3333 7.8 8dtp:C, 8dtp:D, 8dtp:E, 8dtp:F, 8dtp:A, 8due:B, 8due:C, 8due:D, 8due:E, 8due:F, 8due:A, 8duo:A, 8duo:B, 8duo:C, 8duo:D, 8duo:E, 8duo:F, 8dvf:B, 8dvf:C, 8dvf:D, 8dvf:E, 8dvf:F, 8dvf:A, 8dvi:B, 8dvi:C, 8dvi:D, 8dvi:E, 8dvi:F, 8dvi:A, 8dw6:B, 8dw6:C, 8dw6:D, 8dw6:E, 8dw6:F, 8dw6:A, 8g0z:B, 8g0z:C, 8g0z:D, 8g0z:E, 8g0z:F, 8g0z:A, 8gao:B, 8gao:C, 8gao:D, 8gao:E, 8gao:F, 8gao:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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