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BioLiP
>protein
GELKAIAQELKAIAKELKAIAWEHKAIAQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4h8m:A 30 30 0.9333 0.9333 0.9333 1.07e-12
2 6q5j:D 30 30 0.9667 0.9667 0.9667 3.73e-12 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
3 4kvu:B 30 30 0.9000 0.9000 0.9000 1.23e-10 4kvv:H, 4kvv:L
4 4h8g:F 30 30 0.7000 0.7000 0.7000 3.67e-08 4h8g:H
5 3r4a:B 30 30 0.7000 0.7000 0.7000 2.92e-05 3r4a:C, 3r4h:B, 3r4h:C
6 8qac:C 30 30 0.6333 0.6333 0.6333 0.001
7 8qab:A 30 30 0.6333 0.6333 0.6333 0.002 8qab:D
8 8b45:B 30 30 0.4667 0.4667 0.4667 0.003 8b45:C, 8b45:D
9 4dzl:F 32 30 0.5667 0.5312 0.5667 0.004 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
10 5ez8:E 30 24 0.5667 0.5667 0.7083 0.017 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
11 7a1t:C 30 25 0.5667 0.5667 0.6800 0.018 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 4pnb:D 30 24 0.5000 0.5000 0.6250 0.019
13 7bat:B 30 25 0.5333 0.5333 0.6400 0.019 7baw:D, 7baw:F
14 8b16:A 30 24 0.5333 0.5333 0.6667 0.044 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
15 6eiz:A 30 24 0.5000 0.5000 0.6250 0.045 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
16 6i1j:A 30 30 0.5667 0.5667 0.5667 0.046
17 5ez9:F 30 24 0.4333 0.4333 0.5417 0.059 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
18 7bau:D 30 24 0.4667 0.4667 0.5833 0.21 7bau:J, 7bau:E, 7bau:G, 7bau:I
19 6g6a:B 30 24 0.4333 0.4333 0.5417 0.47 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
20 6g68:H 30 24 0.3667 0.3667 0.4583 0.71 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
21 8dtp:B 432 20 0.3333 0.0231 0.5000 1.1 8dtp:C, 8dtp:D, 8dtp:E, 8dtp:F, 8dtp:A, 8due:B, 8due:C, 8due:D, 8due:E, 8due:F, 8due:A, 8duo:A, 8duo:B, 8duo:C, 8duo:D, 8duo:E, 8duo:F, 8dvf:B, 8dvf:C, 8dvf:D, 8dvf:E, 8dvf:F, 8dvf:A, 8dvi:B, 8dvi:C, 8dvi:D, 8dvi:E, 8dvi:F, 8dvi:A, 8dw6:B, 8dw6:C, 8dw6:D, 8dw6:E, 8dw6:F, 8dw6:A, 8g0z:B, 8g0z:C, 8g0z:D, 8g0z:E, 8g0z:F, 8g0z:A, 8gao:B, 8gao:C, 8gao:D, 8gao:E, 8gao:F, 8gao:A
22 5zmp:A 305 19 0.3000 0.0295 0.4737 2.1
23 7oik:A 4426 18 0.2333 0.0016 0.3889 6.6 7oim:A, 6tax:A, 6tay:A
24 6aqg:C 490 29 0.3000 0.0184 0.3103 7.6 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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