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BioLiP
>protein
GELGGLKELGGLKELGGLKELGGLKGGGFK

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qdi:A 31 30 1.0000 0.9677 1.0000 7.79e-10 7qdi:C, 7qdi:E, 7qdi:G
2 8bfe:B 30 30 0.8667 0.8667 0.8667 0.14 8bfe:N
3 6i52:B 132 21 0.3667 0.0833 0.5238 4.5
4 6i52:B 132 19 0.3667 0.0833 0.5789 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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