Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GELDLPERNLDRRELRDLVNELAAHPERWAEHVMHYASLHRDAYVDVWLLCWRAEDDTGWHDHDISSGAVRVVAGALKEC
NPRIGGEHLETVVSEGESFSFGPDHIHRLTGAVHGSVSIHAYSPPLWRLGQYSIDDSGVMRRVSVSYA

The query sequence (length=148) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qfn:A 155 155 1.0000 0.9548 0.9548 8.39e-104 8qfl:A, 8qfl:B, 8qfm:A, 8qfm:B, 8qfn:B, 8qfo:A, 8qfo:B, 8qfp:A, 8qfp:B, 8qfq:A, 8qfq:B, 8qfr:A, 8qfr:B
2 3eqe:A 156 132 0.2432 0.2308 0.2727 6.08e-06 3eqe:B, 4qm8:A, 4qm8:B, 4qm9:A, 4qm9:B
3 6bgf:A 188 96 0.1757 0.1383 0.2708 0.098 2atf:A, 2b5h:A, 6bgm:A, 6bpr:A, 6bps:A, 6bpt:A, 6bpu:A, 6bpv:A, 6bpw:A, 6bpx:A, 6cdh:A, 6cdn:A, 6e87:A, 5efu:A, 3eln:A, 5ezw:A, 2gh2:A, 5i0r:A, 5i0s:A, 5i0t:A, 5i0u:A, 2ic1:A, 4ieo:A, 4iep:A, 4ieq:A, 4ier:A, 4ies:A, 4iet:A, 4ieu:A, 4iev:A, 4iew:A, 4iex:A, 4iey:A, 4iez:A, 4jtn:A, 4jto:A, 4kwj:A, 4kwk:A, 4kwl:A, 6n42:A, 6n43:A, 4pix:A, 4piy:A, 4piz:A, 4pjy:A, 6u1m:A, 6u4l:A, 6u4s:A, 6u4v:A, 4ubg:A, 4ubh:A, 8vl9:D, 8vlb:D, 4xet:A, 4xez:A, 4xf0:A, 4xf1:A, 4xf3:A, 4xf4:A, 4xf9:A, 4xfa:A, 4xfb:A, 4xfc:A, 4xff:A, 4xfg:A, 4xfh:A, 4xfi:A, 4ysf:A, 4yyo:A, 4z82:A
4 6jgz:B 3485 109 0.2297 0.0098 0.3119 0.26 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
5 8tz0:A 505 33 0.0878 0.0257 0.3939 1.2 8tyz:A, 8tz0:B
6 8jzn:A 1489 45 0.1014 0.0101 0.3333 1.3
7 4g09:A 432 50 0.1216 0.0417 0.3600 1.5 4g07:A
8 5lj5:v 426 96 0.1622 0.0563 0.2500 1.8
9 7xe4:F 1503 35 0.0811 0.0080 0.3429 2.9 7yuy:F
10 5go9:A 3423 111 0.2162 0.0093 0.2883 4.7 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
11 6jiy:A 3521 111 0.2162 0.0091 0.2883 4.7 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
12 6jrs:A 3488 111 0.2162 0.0092 0.2883 4.7 6jrs:D, 6jrs:G, 6jrs:J

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218