Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GELAQSIKELAKSIKELAWSIKELAQSIKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6g68:H 30 30 1.0000 1.0000 1.0000 1.65e-13 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
2 4pnb:D 30 30 0.8667 0.8667 0.8667 4.03e-12
3 7bau:D 30 30 0.7000 0.7000 0.7000 1.51e-10 7bau:J, 7bau:E, 7bau:G, 7bau:I
4 6g6a:B 30 30 0.7333 0.7333 0.7333 1.82e-10 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
5 7bat:B 30 30 0.7333 0.7333 0.7333 6.11e-10 7baw:D, 7baw:F
6 6g6f:C 30 30 0.6000 0.6000 0.6000 3.95e-09 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
7 6eiz:A 30 30 0.6667 0.6667 0.6667 5.43e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
8 7bo9:A 30 30 0.5667 0.5667 0.5667 9.73e-09 7bo9:D
9 8b16:A 30 30 0.6000 0.6000 0.6000 1.03e-08 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
10 5ez8:E 30 30 0.6000 0.6000 0.6000 1.92e-08 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
11 7a1t:C 30 30 0.5667 0.5667 0.5667 3.03e-07 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 5ez9:F 30 30 0.4000 0.4000 0.4000 7.31e-06 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
13 7qwa:C 30 30 0.4333 0.4333 0.4333 8.16e-06 7qwa:D
14 7qwb:E 30 30 0.4333 0.4333 0.4333 1.27e-05 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
15 8qac:C 30 26 0.4000 0.4000 0.4615 0.001
16 4h8g:F 30 24 0.5667 0.5667 0.7083 0.002 4h8g:H
17 8qab:A 30 26 0.4000 0.4000 0.4615 0.033 8qab:D
18 4pnd:A 30 30 0.3333 0.3333 0.3333 0.36 4pnd:C
19 6q5j:D 30 24 0.3667 0.3667 0.4583 1.2 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
20 4kvu:B 30 24 0.3333 0.3333 0.4167 1.7 4kvv:H, 4kvv:L
21 4h8m:A 30 24 0.3333 0.3333 0.4167 1.7
22 7tby:A 1788 26 0.4000 0.0067 0.4615 3.5 7tc0:A
23 6idw:A 322 22 0.3333 0.0311 0.4545 3.6 6idw:B, 6idw:C, 6idw:D
24 4bol:A 243 26 0.3000 0.0370 0.3462 4.8 4bol:B, 4bpa:B
25 4xxk:A 149 22 0.2333 0.0470 0.3182 5.0 4xxi:A, 4xxi:B, 4xxk:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218