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BioLiP
>protein
GELAQALKELAKALKEQAWALKELAQALKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6g6a:B 30 30 0.9667 0.9667 0.9667 5.95e-11 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
2 6g6f:C 30 30 0.8667 0.8667 0.8667 1.97e-10 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
3 8b16:A 30 30 0.7667 0.7667 0.7667 2.59e-10 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
4 5ez8:E 30 30 0.8333 0.8333 0.8333 4.44e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
5 6g68:H 30 30 0.7000 0.7000 0.7000 2.21e-09 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
6 4pnb:D 30 30 0.6000 0.6000 0.6000 3.28e-09
7 7bo9:A 30 30 0.7000 0.7000 0.7000 1.49e-08 7bo9:D
8 7bat:B 30 30 0.6000 0.6000 0.6000 1.92e-08 7baw:D, 7baw:F
9 6eiz:A 30 30 0.6667 0.6667 0.6667 2.03e-08 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
10 7qwb:E 30 30 0.7000 0.7000 0.7000 4.19e-08 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
11 7a1t:C 30 30 0.7000 0.7000 0.7000 4.19e-08 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 7bau:D 30 30 0.5667 0.5667 0.5667 5.46e-08 7bau:J, 7bau:E, 7bau:G, 7bau:I
13 5ez9:F 30 30 0.6333 0.6333 0.6333 1.01e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
14 7qwa:C 30 30 0.5667 0.5667 0.5667 3.77e-07 7qwa:D
15 8qac:C 30 26 0.5000 0.5000 0.5769 3.81e-04
16 8qab:A 30 25 0.5000 0.5000 0.6000 0.009 8qab:D
17 4pn8:H 30 30 0.3333 0.3333 0.3333 0.98 4pn8:J
18 4zda:A 735 30 0.4333 0.0177 0.4333 2.4 4zda:B, 4zda:C, 4zda:D, 4zda:E, 4zda:F
19 4h8g:F 30 24 0.4333 0.4333 0.5417 4.8 4h8g:H
20 4etp:A 379 18 0.4000 0.0317 0.6667 6.0 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
21 4h8m:A 30 24 0.4000 0.4000 0.5000 6.3
22 6q5j:D 30 24 0.4333 0.4333 0.5417 6.3 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
23 3fy4:A 522 19 0.2667 0.0153 0.4211 6.5 3fy4:B, 3fy4:C
24 7tby:A 1788 26 0.4333 0.0073 0.5000 7.7 7tc0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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