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BioLiP
>protein
GELAQALKELAKALKELAWALKELAQALKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6g6a:B 30 30 1.0000 1.0000 1.0000 7.62e-12 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
2 6g6f:C 30 30 0.8667 0.8667 0.8667 4.62e-11 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
3 5ez8:E 30 30 0.8333 0.8333 0.8333 7.49e-11 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
4 6g68:H 30 30 0.7333 0.7333 0.7333 1.82e-10 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
5 4pnb:D 30 30 0.6000 0.6000 0.6000 4.20e-10
6 7bat:B 30 30 0.6000 0.6000 0.6000 2.52e-09 7baw:D, 7baw:F
7 8b16:A 30 30 0.7333 0.7333 0.7333 3.39e-09 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
8 6eiz:A 30 30 0.6667 0.6667 0.6667 4.22e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
9 7bo9:A 30 30 0.7000 0.7000 0.7000 6.70e-09 7bo9:D
10 7qwb:E 30 30 0.7000 0.7000 0.7000 6.77e-09 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
11 7a1t:C 30 30 0.7000 0.7000 0.7000 6.77e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 7bau:D 30 30 0.5667 0.5667 0.5667 7.47e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
13 5ez9:F 30 30 0.6333 0.6333 0.6333 1.94e-08 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
14 7qwa:C 30 30 0.5667 0.5667 0.5667 5.40e-08 7qwa:D
15 8qac:C 30 26 0.5000 0.5000 0.5769 6.09e-05
16 8qac:C 30 24 0.3667 0.3667 0.4583 7.3
17 8qab:A 30 26 0.5000 0.5000 0.5769 0.003 8qab:D
18 4pn8:H 30 30 0.3333 0.3333 0.3333 0.11 4pn8:J
19 4h8g:F 30 24 0.4667 0.4667 0.5833 0.47 4h8g:H
20 6q5j:D 30 24 0.4333 0.4333 0.5417 0.86 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
21 4h8m:A 30 24 0.4000 0.4000 0.5000 0.97
22 7tby:A 1788 26 0.4667 0.0078 0.5385 0.98 7tc0:A
23 4kvu:B 30 24 0.4000 0.4000 0.5000 1.5 4kvv:H, 4kvv:L
24 4bol:A 243 26 0.3667 0.0453 0.4231 1.7 4bol:B, 4bpa:B
25 4xxk:A 149 28 0.2667 0.0537 0.2857 4.2 4xxi:A, 4xxi:B, 4xxk:B
26 2y7h:B 529 18 0.3333 0.0189 0.5556 4.9 2y7h:C
27 8kih:A 291 22 0.4000 0.0412 0.5455 5.5 8ki5:A
28 7tbw:A 1928 21 0.4000 0.0062 0.5714 6.1
29 7roq:A 1831 21 0.4000 0.0066 0.5714 6.8
30 1n63:B 805 16 0.3000 0.0112 0.5625 7.7 1n5w:B, 1n5w:E, 1n60:B, 1n60:E, 1n61:B, 1n61:E, 1n62:B, 1n62:E, 1n63:E, 1zxi:B, 1zxi:E
31 7ov8:A 303 20 0.3333 0.0330 0.5000 8.1 7ov2:A, 7ov3:A, 5uq6:A, 1ute:A
32 4ezc:B 346 27 0.3000 0.0260 0.3333 8.5 4ezc:A, 4ezc:C, 4ezd:A, 4ezd:C, 4ezd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218