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BioLiP
>protein
GEKTRVLVVGGTGTMGRRIVRACLAEGHETYVLQQPETRVDIEKVQLLYSYKRLGARLIEASFSDHQSLVSAVKQVDIVV
AAMSGVHFRSHSILVQLKLVEAIKEAGNIKRFLPSEFGMDPSRMDQKLEVRNAIEAAGIPHTYVVGACFAAYFAGNLSQM
GTLIPPKKKVNIYGDGNVKVVYVDEDDIAEYTAKTLDDPRTINKTVYVRPTENVLTQMELVQIWEKLTGKELEKTNISAN
DFLADIEDKEIPHQAGLGHFYHIFYEGCLTDHEVGDDEEASKLYPDVKYTRMDEYLKIFL

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cs6:F 300 300 1.0000 1.0000 1.0000 0.0 7cs3:A, 7cs3:B, 7cs3:C, 7cs3:D, 7cs3:E, 7cs3:F, 7cs4:E, 7cs4:A, 7cs4:F, 7cs4:D, 7cs4:C, 7cs4:B, 7cs5:E, 7cs5:A, 7cs5:F, 7cs5:D, 7cs5:C, 7cs5:B, 7cs6:A, 7cs6:B, 7cs6:C, 7cs6:D, 7cs6:E, 7cs7:A, 7cs7:B, 7cs7:C, 7cs7:D, 7cs7:E, 7cs7:F, 7cs8:A, 7cs8:B, 7cs8:C, 7cs8:D, 7cs8:E, 7cs8:F
2 7csh:A 312 311 0.8567 0.8237 0.8264 0.0
3 7csa:A 310 310 0.8300 0.8032 0.8032 0.0 7csa:B, 7csa:C, 7csa:D, 7csb:C, 7csb:D, 7csb:A, 7csb:B, 7csc:E, 7csc:F, 7csc:A, 7csc:B, 7csc:C, 7csc:D, 7csd:C, 7csd:D, 7csd:A, 7csd:B, 7cse:E, 7cse:F, 7cse:A, 7cse:B, 7cse:C, 7cse:D, 7csf:C, 7csf:D, 7csf:A, 7csf:B
4 3c3x:A 310 313 0.3900 0.3774 0.3738 7.01e-64 3c3x:B, 2qw8:A, 2qw8:B, 2qx7:A, 2qx7:B, 2qzz:A, 2qzz:B, 2r2g:A, 2r2g:B, 2r6j:A, 2r6j:B
5 3c1o:A 314 308 0.3667 0.3503 0.3571 2.79e-62
6 3i6i:A 302 304 0.3500 0.3477 0.3454 1.16e-53 3i52:A, 3i6q:A
7 8vr2:B 321 253 0.2000 0.1869 0.2372 3.92e-05 8vr2:A, 8vr2:C, 8vr2:D
8 7arc:P 347 238 0.1800 0.1556 0.2269 0.009 7ard:P
9 5f5n:A 289 298 0.2300 0.2388 0.2315 0.014 5f5n:B
10 2pzm:A 316 35 0.0400 0.0380 0.3429 0.11 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
11 6bwl:A 313 29 0.0400 0.0383 0.4138 0.12
12 7anc:B 314 58 0.0633 0.0605 0.3276 0.14
13 6bwc:C 327 90 0.0800 0.0734 0.2667 0.15 6bwc:A, 6bwc:B, 6bwc:D, 6bwc:E, 6bwc:F
14 8r2j:B 275 231 0.1700 0.1855 0.2208 0.25 8r2j:A
15 6jiz:C 295 89 0.0767 0.0780 0.2584 0.49 6jit:B, 6jit:C, 6jiz:B
16 3vps:A 303 31 0.0467 0.0462 0.4516 0.52 3vps:B
17 6jkh:A 212 123 0.1033 0.1462 0.2520 0.56 6jkh:B
18 6rxt:CK 297 145 0.1167 0.1178 0.2414 0.56 5jpq:c, 5oql:b, 6rxu:CK, 6rxv:CK, 6rxx:CK, 6rxy:CK, 6rxz:CK
19 6vo6:D 311 121 0.0900 0.0868 0.2231 0.62 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
20 1e2f:A 210 42 0.0567 0.0810 0.4048 0.75 1e2d:A, 1e2e:A, 1e2g:A, 1e2q:A, 1e98:A, 1e99:A, 1e9a:A, 1e9b:A, 1e9c:A, 1e9d:A, 1e9e:A, 1e9f:A, 1nmx:A, 1nmy:A, 1nmz:A, 1nn0:A, 1nn1:A, 1nn3:A, 1nn5:A, 2xx3:A
21 3e8x:A 214 239 0.2200 0.3084 0.2762 0.81
22 2gn4:A 329 82 0.0633 0.0578 0.2317 1.2 2gn4:B, 2gn6:A, 2gn6:B, 2gn8:A, 2gn8:B, 2gn9:A, 2gn9:B, 2gna:A, 2gna:B
23 6wj9:B 308 34 0.0500 0.0487 0.4412 1.3 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
24 5mh5:A 308 131 0.1167 0.1136 0.2672 1.4 5mh5:B, 5mh6:A, 5mh6:B, 5mh6:C, 5mh6:D, 5mha:A, 5mha:B
25 1a9y:A 338 125 0.1000 0.0888 0.2400 1.5 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
26 8fip:A 338 117 0.0933 0.0828 0.2393 1.8 8fio:A, 8fio:B, 8fip:B
27 8hwy:A 287 39 0.0533 0.0557 0.4103 2.5 8hwy:B, 8jku:A, 8jku:B
28 2p5u:A 311 29 0.0533 0.0514 0.5517 2.5 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
29 2q1s:A 336 127 0.1133 0.1012 0.2677 2.6 2pzj:A, 2q1t:A, 2q1u:A, 2q1u:B
30 2rjq:A 292 100 0.0667 0.0685 0.2000 2.6 3b8z:A, 3b8z:B, 3hy7:A, 3hy7:B, 3hy9:A, 3hy9:B, 3hyg:A, 3hyg:B, 3ljt:A, 6yjm:A, 6yjm:B
31 7k3p:A 329 68 0.0600 0.0547 0.2647 3.2 7k3p:B
32 3k6j:A 430 59 0.0633 0.0442 0.3220 3.4
33 7olc:LI 217 40 0.0467 0.0645 0.3500 3.6 7old:LI, 8oo0:LI, 7z3n:LI, 7z3o:LI
34 5t2u:A 241 82 0.0767 0.0954 0.2805 3.9 5t2u:B, 5t2u:C, 5t2u:D
35 6knb:A 450 112 0.0933 0.0622 0.2500 4.1 6knc:A
36 8aaf:e 1527 51 0.0600 0.0118 0.3529 4.2 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
37 3h9e:P 337 55 0.0567 0.0504 0.3091 4.4 5c7o:O, 5c7o:P, 3h9e:O, 3pfw:O, 3pfw:P
38 6ylh:7 547 33 0.0500 0.0274 0.4545 4.8
39 6yle:C 545 33 0.0500 0.0275 0.4545 5.3
40 4b4o:A 295 33 0.0533 0.0542 0.4848 6.3 4b4o:B, 4b4o:C, 4b4o:D, 4b4o:E, 4b4o:F, 4b4o:G, 4b4o:H
41 2b69:A 312 31 0.0333 0.0321 0.3226 6.4 4gll:A, 4gll:B
42 8bk1:A 288 31 0.0400 0.0417 0.3871 6.5 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D
43 3cif:A 338 48 0.0500 0.0444 0.3125 7.0 3cif:B, 3cif:C, 3cif:D, 3cps:A, 3cps:B, 8pvf:A, 1vsv:A, 1vsv:B, 1vsv:C, 1vsv:D
44 1gy8:C 370 29 0.0433 0.0351 0.4483 7.2 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
45 4v8m:BK 212 40 0.0367 0.0519 0.2750 7.2 8ova:BK, 8ove:BK
46 4lk3:B 274 31 0.0333 0.0365 0.3226 7.9 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
47 1k6x:A 324 161 0.1167 0.1080 0.2174 8.3 1ti7:A, 2vut:A, 2vut:B, 2vut:C, 2vut:D, 2vut:E, 2vut:F, 2vut:G, 2vut:H, 2vuu:A, 2vuu:B, 2vuu:C, 2vuu:D, 2vuu:E, 2vuu:F, 2vuu:G, 2vuu:H
48 5ocm:A 290 76 0.0733 0.0759 0.2895 8.6 5ocm:F, 5ocm:B, 5ocm:C, 5ocm:D, 5ocm:E
49 4m55:E 164 31 0.0333 0.0610 0.3226 8.9
50 5it7:dd 106 44 0.0500 0.1415 0.3409 9.1 6uz7:Bd

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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