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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GEILWFRGPSVIVNERIINSGDPHLSLPLNRWFTLEPDVENEKESLPGPFVLGLRPSAKFTAHRLSM

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6v8o:F 67 67 1.0000 1.0000 1.0000 2.34e-44 6v92:F
2 7rk0:B 262 30 0.1791 0.0458 0.4000 0.27 7rk0:A, 7rk0:C, 7rk0:D
3 4y4n:A 259 27 0.1493 0.0386 0.3704 0.60 4y4n:H, 4y4n:B, 4y4n:G, 4y4n:C, 4y4n:D, 4y4n:E, 4y4n:F
4 8y6o:I 597 31 0.1642 0.0184 0.3548 1.1 8qp8:G, 6qw6:5X, 6qx9:5X, 8r08:G
5 2cks:B 306 30 0.1940 0.0425 0.4333 1.6 2ckr:B, 2ckr:A, 2cks:A
6 3i45:A 378 40 0.1791 0.0317 0.3000 3.1
7 4cuo:A 306 32 0.1642 0.0359 0.3438 4.6
8 6y0f:C 722 47 0.2239 0.0208 0.3191 5.6 6y0f:A, 6y0f:B, 6y0f:D
9 8kih:A 291 36 0.1940 0.0447 0.3611 7.4 8ki5:A
10 1dq3:A 454 56 0.2687 0.0396 0.3214 8.3
11 6s0k:h 838 30 0.1642 0.0131 0.3667 8.4 5k9t:A, 2vda:A
12 2fsh:B 722 30 0.1642 0.0152 0.3667 9.3
13 2fsh:A 691 30 0.1642 0.0159 0.3667 9.4 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
14 2atj:A 308 41 0.1493 0.0325 0.2439 9.5 1atj:A, 1atj:B, 1atj:C, 1atj:D, 1atj:E, 1atj:F, 2atj:B, 3atj:A, 3atj:B, 4atj:A, 4atj:B, 6atj:A, 7atj:A, 1gw2:A, 1gwo:A, 1gwt:A, 1gwu:A, 1gx2:A, 1gx2:B, 1h55:A, 1h57:A, 1h58:A, 1h5a:A, 1h5c:A, 1h5d:A, 1h5e:A, 1h5f:A, 1h5g:A, 1h5h:A, 1h5i:A, 1h5j:A, 1h5k:A, 1h5l:A, 1h5m:A, 1hch:A, 1kzm:A, 1w4w:A, 1w4y:A, 2ylj:A
15 2fsi:B 748 30 0.1642 0.0147 0.3667 9.6 2fsg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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