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BioLiP
>protein
GEIGQALKEIGKALKEIGFALKEIGQALKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qwb:E 30 30 1.0000 1.0000 1.0000 5.51e-13 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
2 7qwa:C 30 30 0.8667 0.8667 0.8667 1.78e-10 7qwa:D
3 5ez8:E 30 30 0.8000 0.8000 0.8000 9.27e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
4 6g6a:B 30 30 0.7000 0.7000 0.7000 6.77e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
5 6g6f:C 30 30 0.7000 0.7000 0.7000 3.80e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
6 7bau:D 30 30 0.6000 0.6000 0.6000 1.40e-07 7bau:J, 7bau:E, 7bau:G, 7bau:I
7 6eiz:A 30 30 0.6333 0.6333 0.6333 1.45e-07 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
8 4pnb:D 30 30 0.5667 0.5667 0.5667 1.50e-07
9 8b16:A 30 30 0.6667 0.6667 0.6667 2.68e-07 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
10 5ez9:F 30 30 0.6000 0.6000 0.6000 3.20e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
11 7a1t:C 30 30 0.7333 0.7333 0.7333 4.96e-07 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
12 7bo9:A 30 30 0.6000 0.6000 0.6000 5.79e-07 7bo9:D
13 6g68:H 30 30 0.4333 0.4333 0.4333 1.27e-05 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
14 7bat:B 30 30 0.5667 0.5667 0.5667 3.80e-05 7baw:D, 7baw:F
15 4pn8:H 30 30 0.4333 0.4333 0.4333 0.67 4pn8:J
16 8e73:G2 258 30 0.3333 0.0388 0.3333 1.1 6x89:G2
17 7aqq:y 268 30 0.3333 0.0373 0.3333 2.2 7ar7:y, 7ar8:y, 7arb:y, 8bef:y, 8bpx:y, 8bq5:y, 8bq6:y
18 7aqq:z 233 30 0.3667 0.0472 0.3667 2.5 7a23:q, 7a23:p, 7a24:q, 7a24:p, 7ar7:z, 7ar8:z, 7arb:z, 8bef:z, 8bpx:z, 8bq5:z, 8bq6:z
19 5gzx:A 292 13 0.2333 0.0240 0.5385 3.6 5gzx:B, 5gzx:C, 5gzx:D
20 4ofc:A 335 20 0.3000 0.0269 0.4500 8.2 4igm:A, 4igm:B, 4igm:C, 4igm:D, 4igm:E, 4igm:F, 4ign:A, 4ign:B, 4ign:C, 4ign:D, 4ign:E, 4ign:F, 4ih3:A, 4ih3:B, 4ih3:C, 4ih3:D, 4ih3:E, 4ih3:F, 4ofc:B, 4ofc:C, 4ofc:D, 4ofc:E, 4ofc:F, 7pwy:A, 7pwy:B, 7pwy:D, 2wm1:A
21 7pwy:C 301 20 0.3000 0.0299 0.4500 8.2
22 5ucd:A 435 20 0.3333 0.0230 0.5000 8.8 5ucd:B
23 1sb8:A 341 22 0.3000 0.0264 0.4091 9.5 1sb9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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