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BioLiP
>protein
GEIAQTLKEIAKTLKEQAWTLKEIAQTLKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8b16:A 30 30 1.0000 1.0000 1.0000 5.80e-14 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
2 7bau:D 30 30 0.8000 0.8000 0.8000 8.00e-11 7bau:J, 7bau:E, 7bau:G, 7bau:I
3 6eiz:A 30 30 0.7667 0.7667 0.7667 3.12e-10 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
4 4pnb:D 30 30 0.7000 0.7000 0.7000 3.64e-10
5 5ez8:E 30 30 0.8000 0.8000 0.8000 1.38e-09 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
6 6g6f:C 30 30 0.7333 0.7333 0.7333 3.21e-09 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
7 6g6a:B 30 30 0.7333 0.7333 0.7333 3.39e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
8 7a1t:C 30 30 0.8000 0.8000 0.8000 7.64e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
9 6g68:H 30 30 0.6000 0.6000 0.6000 1.03e-08 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
10 7bat:B 30 30 0.7000 0.7000 0.7000 2.39e-08 7baw:D, 7baw:F
11 7qwa:C 30 30 0.6667 0.6667 0.6667 2.06e-07 7qwa:D
12 7qwb:E 30 30 0.6667 0.6667 0.6667 2.68e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
13 5ez9:F 30 30 0.6000 0.6000 0.6000 3.03e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
14 7bo9:A 30 30 0.5667 0.5667 0.5667 1.61e-06 7bo9:D
15 8qac:C 30 25 0.6000 0.6000 0.7200 7.50e-05
16 8qab:A 30 25 0.6000 0.6000 0.7200 9.98e-05 8qab:D
17 4pn8:H 30 30 0.4333 0.4333 0.4333 0.077 4pn8:J
18 6q5j:D 30 24 0.5333 0.5333 0.6667 0.085 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
19 4h8m:A 30 24 0.5000 0.5000 0.6250 0.12
20 4kvu:B 30 24 0.5000 0.5000 0.6250 0.13 4kvv:H, 4kvv:L
21 8tkp:D 614 25 0.3667 0.0179 0.4400 1.4
22 1ltk:C 424 17 0.3000 0.0212 0.5294 5.8 1ltk:A, 1ltk:B
23 7usw:A 608 22 0.3000 0.0148 0.4091 6.6 7usw:B, 7usx:A, 7usx:B, 7usy:A, 7usy:B
24 8f4b:A 1182 21 0.2667 0.0068 0.3810 7.6
25 6bhu:A 1328 21 0.2667 0.0060 0.3810 8.3 5uja:A, 6uy0:A
26 6dre:A 365 17 0.3000 0.0247 0.5294 9.3 6drh:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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