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BioLiP
>protein
GEIAQTLKEIAKTLKEIAFTLKEIAQTLKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bau:D 30 30 0.8667 0.8667 0.8667 2.80e-12 7bau:J, 7bau:E, 7bau:G, 7bau:I
2 8b16:A 30 30 0.9333 0.9333 0.9333 4.30e-12 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
3 7a1t:C 30 30 0.8667 0.8667 0.8667 1.40e-10 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
4 6eiz:A 30 30 0.7667 0.7667 0.7667 1.45e-10 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
5 4pnb:D 30 30 0.7000 0.7000 0.7000 1.73e-10
6 5ez8:E 30 30 0.8000 0.8000 0.8000 4.44e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
7 7qwa:C 30 30 0.7333 0.7333 0.7333 3.10e-09 7qwa:D
8 6g6a:B 30 30 0.7000 0.7000 0.7000 3.17e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
9 7qwb:E 30 30 0.7333 0.7333 0.7333 4.71e-09 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
10 7bat:B 30 30 0.7000 0.7000 0.7000 1.40e-08 7baw:D, 7baw:F
11 6g68:H 30 30 0.5667 0.5667 0.5667 1.41e-08 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
12 6g6f:C 30 30 0.7000 0.7000 0.7000 1.49e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
13 5ez9:F 30 30 0.6000 0.6000 0.6000 1.52e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
14 7bo9:A 30 30 0.6000 0.6000 0.6000 2.99e-07 7bo9:D
15 8qac:C 30 25 0.6000 0.6000 0.7200 3.19e-05
16 8qac:C 30 23 0.4667 0.4667 0.6087 0.27
17 8qab:A 30 25 0.6000 0.6000 0.7200 8.19e-05 8qab:D
18 8qab:A 30 23 0.4667 0.4667 0.6087 0.85 8qab:D
19 4kvu:B 30 24 0.5333 0.5333 0.6667 0.007 4kvv:H, 4kvv:L
20 6q5j:D 30 24 0.5333 0.5333 0.6667 0.042 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
21 4pn8:H 30 30 0.4333 0.4333 0.4333 0.055 4pn8:J
22 4h8m:A 30 24 0.5000 0.5000 0.6250 0.073
23 4h8g:F 30 24 0.3667 0.3667 0.4583 0.67 4h8g:H
24 4zcs:A 141 19 0.3000 0.0638 0.4737 7.4 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
25 1ltk:C 424 17 0.3000 0.0212 0.5294 8.5 1ltk:A, 1ltk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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