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BioLiP
>protein
GEIAQTIKEIAKTIKEIAFTIKEIAQTIKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bau:D 30 30 1.0000 1.0000 1.0000 6.79e-13 7bau:J, 7bau:E, 7bau:G, 7bau:I
2 4pnb:D 30 30 0.8333 0.8333 0.8333 4.14e-11
3 8b16:A 30 30 0.8000 0.8000 0.8000 8.00e-11 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
4 6g68:H 30 30 0.7000 0.7000 0.7000 1.51e-10 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
5 7bat:B 30 30 0.8333 0.8333 0.8333 2.78e-09 7baw:D, 7baw:F
6 7a1t:C 30 30 0.7333 0.7333 0.7333 3.82e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
7 6eiz:A 30 30 0.6333 0.6333 0.6333 3.87e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
8 5ez8:E 30 30 0.7000 0.7000 0.7000 6.92e-09 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
9 6g6a:B 30 30 0.5667 0.5667 0.5667 7.47e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
10 7bo9:A 30 30 0.6000 0.6000 0.6000 2.76e-08 7bo9:D
11 7qwa:C 30 30 0.6000 0.6000 0.6000 8.01e-08 7qwa:D
12 6g6f:C 30 30 0.5667 0.5667 0.5667 9.98e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
13 7qwb:E 30 30 0.6000 0.6000 0.6000 1.40e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
14 5ez9:F 30 30 0.5000 0.5000 0.5000 2.81e-06 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
15 8qac:C 30 25 0.5000 0.5000 0.6000 4.49e-04
16 8qac:C 30 23 0.3333 0.3333 0.4348 6.6
17 8qab:A 30 25 0.5000 0.5000 0.6000 5.41e-04 8qab:D
18 8qab:A 30 23 0.3333 0.3333 0.4348 9.2 8qab:D
19 4h8g:F 30 24 0.4667 0.4667 0.5833 0.021 4h8g:H
20 4kvu:B 30 24 0.4667 0.4667 0.5833 0.060 4kvv:H, 4kvv:L
21 6q5j:D 30 24 0.4667 0.4667 0.5833 0.38 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
22 4h8m:A 30 24 0.4333 0.4333 0.5417 0.62
23 3fed:A 690 22 0.3667 0.0159 0.5000 5.1 3fec:A, 3fee:A, 3ff3:A
24 7r3a:A 411 19 0.2667 0.0195 0.4211 5.5 7r3a:B, 7r3a:C, 7r3a:D, 7r3a:E, 7r3a:F, 7r3a:G, 7r3a:H
25 8xuq:A 885 23 0.3333 0.0113 0.4348 6.3 8xuo:A, 8xuo:G, 8xuq:E, 8xuq:F, 8xuq:G, 8xuv:A, 8xuv:B, 8xuv:C, 8xuv:D, 8xuv:E, 8xuv:F, 8xuv:G, 8xuv:H, 8xuv:I, 8xuv:J, 8xuv:K, 8xuv:L
26 8c6z:A 573 30 0.3667 0.0192 0.3667 7.3 8ovr:A
27 3h0g:M 1476 23 0.3000 0.0061 0.3913 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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