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BioLiP
>protein
GEIAQSIKEIAKSIKEIAWSIKEIAQSIKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4pnb:D 30 30 1.0000 1.0000 1.0000 1.14e-12
2 6g68:H 30 30 0.8667 0.8667 0.8667 4.03e-12 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
3 7bau:D 30 30 0.8333 0.8333 0.8333 4.14e-11 7bau:J, 7bau:E, 7bau:G, 7bau:I
4 6eiz:A 30 30 0.8000 0.8000 0.8000 8.64e-11 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
5 7bat:B 30 30 0.8667 0.8667 0.8667 1.67e-10 7baw:D, 7baw:F
6 8b16:A 30 30 0.7000 0.7000 0.7000 3.64e-10 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
7 6g6a:B 30 30 0.6000 0.6000 0.6000 4.20e-10 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
8 5ez8:E 30 30 0.7333 0.7333 0.7333 4.20e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
9 6g6f:C 30 30 0.6000 0.6000 0.6000 1.39e-09 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
10 7a1t:C 30 30 0.7000 0.7000 0.7000 3.43e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
11 7bo9:A 30 30 0.5667 0.5667 0.5667 3.02e-08 7bo9:D
12 7qwa:C 30 30 0.5667 0.5667 0.5667 9.66e-08 7qwa:D
13 7qwb:E 30 30 0.5667 0.5667 0.5667 1.50e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
14 5ez9:F 30 30 0.5333 0.5333 0.5333 1.55e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
15 8qac:C 30 26 0.5333 0.5333 0.6154 1.96e-05
16 8qac:C 30 24 0.3333 0.3333 0.4167 8.1
17 8qab:A 30 26 0.5333 0.5333 0.6154 2.68e-04 8qab:D
18 4pnd:A 30 30 0.4667 0.4667 0.4667 0.017 4pnd:C
19 6q5j:D 30 24 0.5000 0.5000 0.6250 0.034 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
20 4kvu:B 30 24 0.4667 0.4667 0.5833 0.043 4kvv:H, 4kvv:L
21 4h8m:A 30 24 0.4667 0.4667 0.5833 0.048
22 4h8g:F 30 24 0.4333 0.4333 0.5417 0.050 4h8g:H
23 6idw:A 322 24 0.3000 0.0280 0.3750 4.0 6idw:B, 6idw:C, 6idw:D
24 4xxk:A 149 22 0.2333 0.0470 0.3182 4.1 4xxi:A, 4xxi:B, 4xxk:B
25 4pn8:H 30 30 0.3333 0.3333 0.3333 4.1 4pn8:J
26 3rk2:G 77 17 0.2333 0.0909 0.4118 8.3 6wvw:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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