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BioLiP
>protein
GEIAQGLKEIAKGLKEIAFGLKEIAQGLKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7a1t:C 30 30 1.0000 1.0000 1.0000 5.51e-13 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
2 7bat:B 30 30 0.8333 0.8333 0.8333 3.71e-11 7baw:D, 7baw:F
3 7qwa:C 30 30 0.8667 0.8667 0.8667 1.78e-10 7qwa:D
4 5ez8:E 30 30 0.8000 0.8000 0.8000 9.27e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
5 6eiz:A 30 30 0.7667 0.7667 0.7667 3.17e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
6 4pnb:D 30 30 0.7000 0.7000 0.7000 3.43e-09
7 7bau:D 30 30 0.7333 0.7333 0.7333 3.82e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
8 6g6a:B 30 30 0.7000 0.7000 0.7000 6.77e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
9 8b16:A 30 30 0.8000 0.8000 0.8000 7.64e-09 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
10 6g6f:C 30 30 0.7000 0.7000 0.7000 3.80e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
11 8qac:C 30 26 0.7333 0.7333 0.8462 6.43e-08
12 8qac:C 30 24 0.6000 0.6000 0.7500 3.56e-04
13 6g68:H 30 30 0.5667 0.5667 0.5667 3.03e-07 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
14 5ez9:F 30 30 0.6000 0.6000 0.6000 3.20e-07 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
15 7qwb:E 30 30 0.7333 0.7333 0.7333 4.96e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
16 7bo9:A 30 30 0.6000 0.6000 0.6000 5.79e-07 7bo9:D
17 8qab:A 30 26 0.6333 0.6333 0.7308 1.58e-04 8qab:D
18 8qab:A 30 23 0.4667 0.4667 0.6087 8.6 8qab:D
19 4kvu:B 30 25 0.5667 0.5667 0.6800 0.005 4kvv:H, 4kvv:L
20 6q5j:D 30 25 0.5667 0.5667 0.6800 0.033 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
21 4h8m:A 30 25 0.5333 0.5333 0.6400 0.045
22 4h8g:F 30 25 0.4000 0.4000 0.4800 0.47 4h8g:H
23 4pn8:H 30 30 0.4333 0.4333 0.4333 4.4 4pn8:J
24 5vdn:A 449 23 0.3333 0.0223 0.4348 7.6 5vdn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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