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BioLiP
>protein
GEIAQALKEIAKALKEIAWALKEIAQAYKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ez8:E 30 30 0.9333 0.9333 0.9333 1.59e-11 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
2 6g6a:B 30 30 0.8333 0.8333 0.8333 6.93e-11 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
3 6g6f:C 30 30 0.8333 0.8333 0.8333 2.40e-10 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
4 4pnb:D 30 30 0.7333 0.7333 0.7333 4.54e-10
5 6eiz:A 30 30 0.7667 0.7667 0.7667 6.52e-10 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
6 7qwb:E 30 30 0.8000 0.8000 0.8000 1.07e-09 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
7 7a1t:C 30 30 0.8000 0.8000 0.8000 1.07e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
8 8b16:A 30 30 0.8000 0.8000 0.8000 1.30e-09 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
9 7bat:B 30 30 0.7333 0.7333 0.7333 2.84e-09 7baw:D, 7baw:F
10 5ez9:F 30 30 0.7333 0.7333 0.7333 4.76e-09 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
11 7qwa:C 30 30 0.6667 0.6667 0.6667 8.53e-09 7qwa:D
12 7bau:D 30 30 0.7000 0.7000 0.7000 8.53e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
13 6g68:H 30 30 0.6000 0.6000 0.6000 2.32e-08 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
14 7bo9:A 30 30 0.7000 0.7000 0.7000 3.73e-07 7bo9:D
15 8qac:C 30 26 0.6333 0.6333 0.7308 2.39e-06
16 8qab:A 30 25 0.6333 0.6333 0.7600 3.26e-05 8qab:D
17 4pn8:H 30 30 0.4333 0.4333 0.4333 0.032 4pn8:J
18 6q5j:D 30 24 0.5667 0.5667 0.7083 0.044 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
19 4h8m:A 30 24 0.5333 0.5333 0.6667 0.049
20 4kvu:B 30 24 0.5333 0.5333 0.6667 0.090 4kvv:H, 4kvv:L
21 5zmp:A 305 19 0.3333 0.0328 0.5263 2.0
22 1ej6:C 1221 13 0.3000 0.0074 0.6923 2.5 7elh:G, 7elh:K, 7elh:m, 7yed:A, 7yed:E, 7yed:B, 7yed:C, 7yed:a, 7yed:b, 7yed:c, 7yed:d, 7yed:e, 7yev:A, 7yev:B, 7yev:C, 7yev:a, 7yev:b, 7yev:c, 7yev:d, 7yev:e, 7yez:b, 7yf0:B, 7yf0:C, 7yf0:a, 7yf0:b, 7yf0:c, 7yf0:d, 7yf0:e, 7yfe:B, 7yfe:C, 7yfe:a, 7yfe:b, 7yfe:c, 7yfe:d, 7yfe:e
23 4ezc:B 346 25 0.3333 0.0289 0.4000 2.8 4ezc:A, 4ezc:C, 4ezd:A, 4ezd:C, 4ezd:B
24 8gju:J 689 24 0.3667 0.0160 0.4583 4.6 8gju:K, 8gju:L, 8gju:H
25 6dre:A 365 17 0.3000 0.0247 0.5294 8.4 6drh:C
26 4bol:A 243 26 0.2667 0.0329 0.3077 8.5 4bol:B, 4bpa:B
27 5mr6:A 396 20 0.2667 0.0202 0.4000 8.9 5lvw:A, 5mr6:D, 5mr6:B, 5mr6:C, 5mr6:E, 5mr6:H, 5mr6:F, 5mr6:G, 5mr6:I, 5mr6:L, 5mr6:J, 5mr6:K, 5mr6:M, 5mr6:P, 5mr6:N, 5mr6:O, 5mr6:Q, 5mr6:R, 5mr6:S, 5mr6:T, 5mr6:U, 5mr6:V, 5mr6:W, 5mr6:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218