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BioLiP
>protein
GEIAQALKEIAKALKEIAWALKEIAQALKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ez8:E 30 30 0.9667 0.9667 0.9667 3.94e-12 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
2 6g6a:B 30 30 0.8667 0.8667 0.8667 2.50e-11 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
3 6g6f:C 30 30 0.8667 0.8667 0.8667 3.08e-11 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
4 6eiz:A 30 30 0.8000 0.8000 0.8000 1.55e-10 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
5 4pnb:D 30 30 0.7333 0.7333 0.7333 1.91e-10
6 7qwb:E 30 30 0.8333 0.8333 0.8333 2.48e-10 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
7 7a1t:C 30 30 0.8333 0.8333 0.8333 2.48e-10 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
8 8b16:A 30 30 0.8333 0.8333 0.8333 2.83e-10 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
9 5ez9:F 30 30 0.7667 0.7667 0.7667 1.00e-09 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
10 7bat:B 30 30 0.7333 0.7333 0.7333 1.06e-09 7baw:D, 7baw:F
11 7qwa:C 30 30 0.7000 0.7000 0.7000 2.00e-09 7qwa:D
12 7bau:D 30 30 0.7000 0.7000 0.7000 3.24e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
13 6g68:H 30 30 0.6000 0.6000 0.6000 1.25e-08 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
14 7bo9:A 30 30 0.7000 0.7000 0.7000 3.22e-08 7bo9:D
15 8qac:C 30 26 0.6333 0.6333 0.7308 2.63e-06
16 8qac:C 30 24 0.4667 0.4667 0.5833 0.49
17 8qab:A 30 26 0.6333 0.6333 0.7308 4.06e-05 8qab:D
18 4pn8:H 30 30 0.4667 0.4667 0.4667 0.010 4pn8:J
19 6q5j:D 30 24 0.5667 0.5667 0.7083 0.044 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
20 4h8m:A 30 24 0.5333 0.5333 0.6667 0.048
21 4kvu:B 30 24 0.5333 0.5333 0.6667 0.077 4kvv:H, 4kvv:L
22 5zmp:A 305 19 0.3333 0.0328 0.5263 1.8
23 4ezc:B 346 27 0.3333 0.0289 0.3704 2.2 4ezc:A, 4ezc:C, 4ezd:A, 4ezd:C, 4ezd:B
24 8gju:J 689 29 0.3667 0.0160 0.3793 3.7 8gju:K, 8gju:L, 8gju:H
25 4bol:A 243 26 0.2667 0.0329 0.3077 8.1 4bol:B, 4bpa:B
26 5mr6:A 396 20 0.2667 0.0202 0.4000 9.9 5lvw:A, 5mr6:D, 5mr6:B, 5mr6:C, 5mr6:E, 5mr6:H, 5mr6:F, 5mr6:G, 5mr6:I, 5mr6:L, 5mr6:J, 5mr6:K, 5mr6:M, 5mr6:P, 5mr6:N, 5mr6:O, 5mr6:Q, 5mr6:R, 5mr6:S, 5mr6:T, 5mr6:U, 5mr6:V, 5mr6:W, 5mr6:X

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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