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BioLiP
>protein
GEIAKSLKEIAKSLKEIAWSLKEIAKSLKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6eiz:A 30 30 1.0000 1.0000 1.0000 9.24e-13 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
2 4pnb:D 30 30 0.8000 0.8000 0.8000 8.64e-11
3 8b16:A 30 30 0.7667 0.7667 0.7667 3.12e-10 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
4 5ez8:E 30 30 0.7667 0.7667 0.7667 6.24e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
5 5ez9:F 30 30 0.7000 0.7000 0.7000 1.18e-09 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
6 7a1t:C 30 30 0.7667 0.7667 0.7667 3.17e-09 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
7 7bau:D 30 30 0.6333 0.6333 0.6333 3.87e-09 7bau:J, 7bau:E, 7bau:G, 7bau:I
8 6g6a:B 30 30 0.6667 0.6667 0.6667 4.22e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
9 6g68:H 30 30 0.6667 0.6667 0.6667 5.43e-09 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
10 6g6f:C 30 30 0.6667 0.6667 0.6667 5.55e-09 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
11 7bat:B 30 30 0.6667 0.6667 0.6667 1.43e-08 7baw:D, 7baw:F
12 7qwa:C 30 30 0.6333 0.6333 0.6333 8.75e-08 7qwa:D
13 7qwb:E 30 30 0.6333 0.6333 0.6333 1.45e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
14 7bo9:A 30 30 0.5000 0.5000 0.5000 8.34e-06 7bo9:D
15 8qac:C 30 26 0.5667 0.5667 0.6538 3.55e-05
16 8qac:C 30 24 0.4667 0.4667 0.5833 0.57
17 8qab:A 30 26 0.5667 0.5667 0.6538 0.001 8qab:D
18 6q5j:D 30 24 0.5000 0.5000 0.6250 0.080 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
19 4h8m:A 30 24 0.4667 0.4667 0.5833 0.12
20 4pn8:H 30 30 0.4000 0.4000 0.4000 0.50 4pn8:J
21 6tf9:eP1 625 24 0.3333 0.0160 0.4167 0.74
22 4bol:A 243 26 0.2667 0.0329 0.3077 2.1 4bol:B, 4bpa:B
23 6bbm:A 405 29 0.3667 0.0272 0.3793 4.2
24 6bbm:D 455 29 0.3667 0.0242 0.3793 4.5 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
25 6e9b:D 368 24 0.4000 0.0326 0.5000 5.1
26 8a3v:A 450 29 0.3667 0.0244 0.3793 5.2 8a3v:B, 6t66:A, 6t66:B, 6t66:C, 6t66:D, 6t66:E, 6t66:F
27 4by9:F 366 20 0.3333 0.0273 0.5000 7.6 4by9:I, 4by9:C, 4by9:L, 3nmu:A, 3nmu:B, 3nvi:A, 3nvi:C, 3nvk:A, 3nvk:F
28 1n63:B 805 16 0.2667 0.0099 0.5000 9.6 1n5w:B, 1n5w:E, 1n60:B, 1n60:E, 1n61:B, 1n61:E, 1n62:B, 1n62:E, 1n63:E, 1zxi:B, 1zxi:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218