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BioLiP
>protein
GEIAKALREIAKALREIAWAHREIAKALRG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ez9:F 30 30 1.0000 1.0000 1.0000 1.41e-13 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
2 5ez8:E 30 30 0.7667 0.7667 0.7667 6.59e-10 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
3 6eiz:A 30 30 0.7000 0.7000 0.7000 1.18e-09 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
4 6g6a:B 30 30 0.6333 0.6333 0.6333 1.94e-08 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
5 6g6f:C 30 30 0.6333 0.6333 0.6333 3.72e-08 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
6 4pnb:D 30 30 0.5333 0.5333 0.5333 1.55e-07
7 8b16:A 30 30 0.6000 0.6000 0.6000 3.03e-07 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
8 7qwb:E 30 30 0.6000 0.6000 0.6000 3.20e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
9 7a1t:C 30 30 0.6000 0.6000 0.6000 3.20e-07 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
10 7bat:B 30 30 0.5333 0.5333 0.5333 8.13e-07 7baw:D, 7baw:F
11 7bau:D 30 30 0.5000 0.5000 0.5000 2.81e-06 7bau:J, 7bau:E, 7bau:G, 7bau:I
12 7qwa:C 30 30 0.4667 0.4667 0.4667 3.14e-06 7qwa:D
13 6g68:H 30 30 0.4000 0.4000 0.4000 7.31e-06 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
14 7bo9:A 30 30 0.5000 0.5000 0.5000 4.33e-05 7bo9:D
15 8qac:C 30 26 0.4667 0.4667 0.5385 0.001
16 8qab:A 30 25 0.4667 0.4667 0.5600 0.010 8qab:D
17 4h8m:A 30 24 0.4000 0.4000 0.5000 0.11
18 4pn8:H 30 30 0.3667 0.3667 0.3667 0.19 4pn8:J
19 6q5j:D 30 24 0.4000 0.4000 0.5000 0.94 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
20 6aqg:C 490 27 0.3667 0.0224 0.4074 2.6 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D
21 7kn1:A 336 22 0.3000 0.0268 0.4091 5.2 7kn1:B
22 7yes:A 1369 25 0.3667 0.0080 0.4400 5.6 8jsl:A, 8jsm:A, 8jsn:A, 7yer:A
23 4bol:A 243 26 0.2667 0.0329 0.3077 5.9 4bol:B, 4bpa:B
24 2aqx:A 289 29 0.3333 0.0346 0.3448 6.7 2aqx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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