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BioLiP
>protein
GEIAAIKQEIAAIKKEIAAIKFEIAAIKQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dzl:F 32 30 1.0000 0.9375 1.0000 9.43e-12 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
2 3r4a:B 30 30 0.8333 0.8333 0.8333 1.25e-10 3r4a:C, 3r4h:B, 3r4h:C
3 6i1j:A 30 30 0.9000 0.9000 0.9000 1.32e-09
4 8b45:B 30 30 0.7000 0.7000 0.7000 1.10e-08 8b45:C, 8b45:D
5 8bfe:B 30 30 0.3667 0.3667 0.3667 1.19e-04 8bfe:N
6 4h8g:F 30 30 0.6000 0.6000 0.6000 2.37e-04 4h8g:H
7 6f37:A 113 20 0.5667 0.1504 0.8500 2.78e-04 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
8 6f37:A 113 22 0.5333 0.1416 0.7273 0.003 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
9 4kvu:B 30 30 0.5667 0.5667 0.5667 0.001 4kvv:H, 4kvv:L
10 6q5j:D 30 30 0.5667 0.5667 0.5667 0.008 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
11 4h8m:A 30 30 0.5333 0.5333 0.5333 0.009
12 7q1s:E 30 23 0.4000 0.4000 0.5217 0.023 7q1s:M, 7q1s:A
13 7q1s:E 30 23 0.3667 0.3667 0.4783 0.39 7q1s:M, 7q1s:A
14 4etp:B 287 22 0.4333 0.0453 0.5909 0.044
15 4etp:B 287 17 0.3667 0.0383 0.6471 0.42
16 4etp:B 287 19 0.3667 0.0383 0.5789 1.1
17 4etp:A 379 28 0.4667 0.0369 0.5000 0.066 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
18 4etp:A 379 16 0.3000 0.0237 0.5625 9.9 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
19 7q1s:J 30 23 0.3667 0.3667 0.4783 0.11 7q1s:N, 7q1s:F
20 7q1s:J 30 23 0.3667 0.3667 0.4783 1.0 7q1s:N, 7q1s:F
21 1g6u:A 48 27 0.3667 0.2292 0.4074 0.17 1g6u:B
22 1g6u:A 48 33 0.4000 0.2500 0.3636 8.2 1g6u:B
23 5nug:A 2920 28 0.3667 0.0038 0.3929 3.0 5nug:B
24 8ptk:f 4502 26 0.3667 0.0024 0.4231 5.0 8ptk:e
25 7z8f:e 4579 26 0.3667 0.0024 0.4231 5.4 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
26 9cf1:P 726 24 0.3000 0.0124 0.3750 7.5 9cf0:P, 9cf2:P, 9cf3:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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