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BioLiP
>protein
GEIAAIKQEIAAHKKEHAAIKWEIAAIKQG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6i1j:A 30 30 1.0000 1.0000 1.0000 4.01e-13
2 3r4a:B 30 30 0.8333 0.8333 0.8333 5.72e-10 3r4a:C, 3r4h:B, 3r4h:C
3 4dzl:F 32 30 0.9000 0.8438 0.9000 1.43e-09 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
4 8b45:B 30 30 0.6667 0.6667 0.6667 1.53e-07 8b45:C, 8b45:D
5 7q1s:E 30 23 0.4333 0.4333 0.5652 0.003 7q1s:M, 7q1s:A
6 6f37:A 113 20 0.5333 0.1416 0.8000 0.012 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A
7 7q1s:J 30 23 0.4000 0.4000 0.5217 0.016 7q1s:N, 7q1s:F
8 8bfe:B 30 30 0.3667 0.3667 0.3667 0.016 8bfe:N
9 4kvu:B 30 30 0.5333 0.5333 0.5333 0.017 4kvv:H, 4kvv:L
10 4h8g:F 30 30 0.5333 0.5333 0.5333 0.024 4h8g:H
11 6q5j:D 30 30 0.5667 0.5667 0.5667 0.032 6q5j:A, 6q5n:B, 6q5n:J, 6q5n:I, 6q5n:F, 6q5n:H, 6q5n:L, 3r47:H, 3r47:K
12 4h8m:A 30 30 0.5333 0.5333 0.5333 0.091
13 4g1e:A 964 26 0.3000 0.0093 0.3462 0.42 5ffg:A, 5ffo:A, 5ffo:E, 4g1m:A, 3ije:A, 1jv2:A, 1l5g:A, 1m1x:A, 6mk0:A, 4mmx:A, 4mmy:A, 4mmz:A, 6msl:A, 6msu:A, 6naj:A, 5nem:A, 5ner:A, 5net:A, 4o02:A, 6om1:A, 6om1:C, 6om1:E, 6om1:G, 6om2:A, 6om2:C, 8tcf:A, 8tcg:A, 1u8c:A, 6uja:A, 6ujb:A, 6ujc:A, 4um8:C, 4um8:A, 4um9:A, 4um9:C, 8vs6:A, 8vsd:A, 7y1t:A
14 4etp:B 287 22 0.4000 0.0418 0.5455 0.58
15 4etp:B 287 15 0.3333 0.0348 0.6667 3.4
16 4etp:A 379 28 0.4333 0.0343 0.4643 2.1 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
17 1g6u:A 48 27 0.3667 0.2292 0.4074 2.2 1g6u:B
18 7s8t:J 83 22 0.3333 0.1205 0.4545 3.3 7s8t:A, 7s8t:E, 7s8t:F, 7s8t:H, 7s8t:G, 7s8t:I
19 8wue:A 226 19 0.2667 0.0354 0.4211 7.8 7w2c:A, 7w2c:C, 7w2c:E, 7w2c:B, 7w2c:D, 7w2c:F, 7w2c:G, 7w2c:H, 7w2c:I, 7w2c:J, 7w2c:K, 7w2c:L, 7w2d:A, 7w2d:C, 7w2d:E, 7w2d:B, 7w2d:D, 7w2d:F, 7w2d:G, 7w2d:H, 7w2d:I, 7w2d:J, 7w2d:K, 7w2d:L, 7w2f:A, 7w2f:B, 7w2f:C, 7w2f:D, 7w2f:E, 7w2f:F, 7w2f:G, 7w2f:H, 7w2f:I, 7w2f:J, 7w2f:K, 7w2f:L, 7w2g:A, 7w2g:B, 7w2g:C, 7w2g:D, 7w2g:E, 7w2g:F, 7w2g:G, 7w2g:H, 7w2g:I, 7w2g:J, 7w2g:K, 7w2g:L, 7w2h:A, 7w2h:C, 7w2h:E, 7w2h:B, 7w2h:D, 7w2h:F, 7w2h:G, 7w2h:H, 7w2h:I, 7w2h:J, 7w2h:K, 7w2h:L, 7w2h:M, 7w2h:N, 7w2h:O, 7w2h:P, 7w2h:Q, 7w2h:R, 7w2h:S, 7w2h:T, 7w2h:U, 7w2h:V, 7w2h:W, 7w2h:X, 8w4b:A, 8w4c:A, 8wue:B, 8wue:C, 8wue:D, 8wue:E, 8wue:F, 8wwb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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